RNA id: TU46020


Basic Information

Item Value
RNA id TU46020
length 271
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G40547
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7325882 ~ 7326152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACCCCCATGTCATCCAAGATGTTCATGTCTGTCTTTCTTTCTTCAGTCAAAAAGAAATTAAGGTTTTTGATGAAAACATTCCAGGATTATTCTCCTTTAATGGACTTCAATGGACACCAAACAGTTCAAGGTCAAAATGACAGTTTCAGTGCAGCTTCAAAGGGCTTTAAACGATACCAGACGAGGAATAAGGGTCTTATCTAGCGAAACGATCGGTCATTTTCGAAAAAAATGTAAATGTATATACTTTATATAAACAAATGATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46003 lncRNA downstream 6917 7318589 ~ 7318965 (-) True G40531
TU45963 lncRNA downstream 8396 7313244 ~ 7317486 (-) False G40519
TU45969 lncRNA downstream 8396 7313244 ~ 7317486 (-) True G40519
TU45980 lncRNA downstream 11360 7313031 ~ 7314522 (-) False G40519
TU45960 lncRNA downstream 11448 7313031 ~ 7314434 (-) False G40519
TU46022 lncRNA upstream 883 7327035 ~ 7327239 (-) True G40549
TU46012 lncRNA upstream 12674 7338826 ~ 7343204 (-) True G40539
TU46023 lncRNA upstream 37724 7363876 ~ 7364088 (-) True G40550
TU46024 lncRNA upstream 38645 7364797 ~ 7365154 (-) True G40551
TU46026 lncRNA upstream 42834 7368986 ~ 7369202 (-) True G40553
CI01000005_07190084_07218097.mRNA mRNA downstream 107749 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07143500_07144465.mRNA mRNA downstream 181317 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07111233_07112234.mRNA mRNA downstream 213616 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07093538_07094533.mRNA mRNA downstream 231313 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07052874_07068345.mRNA mRNA downstream 257505 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07355833_07360372.mRNA mRNA upstream 29681 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
CI01000005_07373961_07374634.mRNA mRNA upstream 47258 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07398684_07399164.mRNA mRNA upstream 72335 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07436839_07437813.mRNA mRNA upstream 109913 7436065 ~ 7438424 (-) True CI01000005_07436839_07437813
CI01000005_07591912_07592984.mRNA mRNA upstream 265760 7591912 ~ 7592991 (-) True CI01000005_07591912_07592984
TU45920 other downstream 129454 7195795 ~ 7196428 (-) True G40487
TU45564 other downstream 842393 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1491343 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1491490 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2924772 4381238 ~ 4401110 (-) True G38415
TU46013 other upstream 200069 7526221 ~ 7532148 (-) True G40540

Expression Profile