RNA id: TU45980


Basic Information

Item Value
RNA id TU45980
length 1069
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G40519
representative False

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7292072 ~ 7317486 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACACAAAATATTTATTTATTTTCAACGGCTATTTGTCTGTTTAAGGAAATGACGTCTTTGTGCCTTGGACGTTTCCGGTTAGGTGTCGAGCTCGAGCGCGTTCAAAACATCGGCGGGAGGCGCTTGATGCACAGTCGGATTGTGATAATATATTCTTTTAATATCAGGATTATAAATATAAAATTACAACTAGGCCAGTGTTTACAGTTAGATTCAGTGGTTTAATGCTCCCTCATGCCCGGAACTAAAGTTAAAGTGTTATTAAATTGAAGCGGGAAGGCTGGAAACCAACTAGCAGCTCTAGGAAATGTAGTACATATTTTGATTCTGGGAAGCCATCAGATGACCATGTAAGTCCAGACTGCAGAAAGGCTTCAGTGAACTATAACATGCTGCTGTGGATCAGTCCTGAAGACACCAGTGATTTACAGGTGGAAGAGAATTAATGTCACAGTTATAATAACCTGGGGAACTAAAGAGACCTTTCTCCTGACTCTGAGAAACAGGAACCTGATGGATCTTATCTGGGGCCCCTGGGAGCCTTCCAAAGCTCTGAACTCCAAGTTGGTGACCCCAAAACCCCAATGGGGTCACCTGTGGGGTGCTCATCCTGCTAAAATGAGAGAAATCAGGGAATTGGGATCGTTCAGGGGCGGGCTAGTACTGTCACAATATGTCCCTGATATGAGGGAATGTGTTCTATTTAAATCATATTTAAATTAATGTAAAATAAAATATTTTAAGATATTAACATCATAAAATAGTTTTGTATCATATTCAAAATATTTCTTAAAACGCTCAAACTTGAATTCCGTAAAATGTCTTGTTTATACCAAATGTGTCAACGATATCAAGGACCCTTCTGTTTTAATTCATTAATTCATATATTTCAAAGTATAGTCAAATATTTAAAATATATTAAACTGAATATTGAATATTTTAAAATATTCAAATAATATTCTATTTATATGTAAAAAATTATATTATCTTTGTTTAAAACACTCAATGTTTGAATTGTCAATTCCATAACATTCCTTGTTTATACTTTATGCATTAATGATATTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45965 lncRNA downstream 20451 7292072 ~ 7292580 (-) False G40519
TU45985 lncRNA downstream 25789 7285314 ~ 7287242 (-) True G40520
TU45956 lncRNA downstream 28096 7283721 ~ 7284935 (-) False G40518
TU46003 lncRNA upstream 4067 7318589 ~ 7318965 (-) True G40531
TU46020 lncRNA upstream 11360 7325882 ~ 7326152 (-) True G40547
TU46022 lncRNA upstream 12513 7327035 ~ 7327239 (-) True G40549
TU46012 lncRNA upstream 24304 7338826 ~ 7343204 (-) True G40539
TU46023 lncRNA upstream 49354 7363876 ~ 7364088 (-) True G40550
CI01000005_07190084_07218097.mRNA mRNA downstream 94898 7189596 ~ 7218133 (-) True CI01000005_07190084_07218097
CI01000005_07143500_07144465.mRNA mRNA downstream 168466 7143482 ~ 7144565 (-) True CI01000005_07143500_07144465
CI01000005_07111233_07112234.mRNA mRNA downstream 200765 7110722 ~ 7112266 (-) True CI01000005_07111233_07112234
CI01000005_07093538_07094533.mRNA mRNA downstream 218462 7093482 ~ 7094569 (-) True CI01000005_07093538_07094533
CI01000005_07052874_07068345.mRNA mRNA downstream 244654 7052730 ~ 7068377 (-) True CI01000005_07052874_07068345
CI01000005_07355833_07360372.mRNA mRNA upstream 41311 7355833 ~ 7360372 (-) True CI01000005_07355833_07360372
CI01000005_07373961_07374634.mRNA mRNA upstream 58888 7373410 ~ 7374634 (-) True CI01000005_07373961_07374634
CI01000005_07398684_07399164.mRNA mRNA upstream 83965 7398487 ~ 7399164 (-) True CI01000005_07398684_07399164
CI01000005_07436839_07437813.mRNA mRNA upstream 121543 7436065 ~ 7438424 (-) True CI01000005_07436839_07437813
CI01000005_07591912_07592984.mRNA mRNA upstream 277390 7591912 ~ 7592991 (-) True CI01000005_07591912_07592984
TU45920 other downstream 116603 7195795 ~ 7196428 (-) True G40487
TU45564 other downstream 829542 6480689 ~ 6483489 (-) True G40190
TU44763 other downstream 1478492 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 1478639 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2911921 4381238 ~ 4401110 (-) True G38415
TU46013 other upstream 211699 7526221 ~ 7532148 (-) True G40540

Expression Profile