G37739


Basic Information

Item Value
gene id G37739
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 2845604 ~ 2881743 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU42798
NNNNNNAATGAATGAATATAATATACAAGTTTCACTTTTTGAATGGAATTAGTGAAATAAATCAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATGATTCATTTAATTTATTATTTCCATTTAGCATTGTTTTTTTTCACCACTGTCCTATCAAATGAGCCGTAACCCACCAGTTGAGAGCCACTGTTATATGACATTATTGCTGATAATTATTATAGACATCATATAAAGTATGAGCGAAAAACACAGATACTTGTGTAAAGGTGTTCTAAATATTATAAAGCCAGCAGCATTTATCAGCCAAGAGTGACACAGCTCTCATTTCAACAACATATACAAATAACGATGAAATGAGGAATTTATACCTTCAATCCCTTGATTAAAAATTAACCAAAACATTCACACATTTGAACATTCTTAAAACCAGAAATAATTATAGCTGAATGTTGCAGGAGATTCATTATATAATGAAATGAAAATACCGTTTCACTTCCCCCAAACAACATCCTTACGCTGCCACCCACAGGAGTTTTAGTCTTTCTTAAAGGCGCTGTGATACAAATCAAAACAGTTGACAGCTCTATTTTAAGGACCAGACGGTGGTCGGTGCAAATAAAACAAGTACAGAAATGGCATAATTTCTGTCACAAGGGAGAAAAAAATAAAAATAGTAATGGCACATCTTCTGATTAAAAAAAAAAAAAAAAAGCAGCCCAGAACGACTTTGAGAGTATAAATGACAGAATTGTCTCTTTAAAAGCTCTTACACACGTTGTGTTACCAGCTTACCTCCATGACCATCATAGACCGCAAACATAGCGGTTTCATCATCCAACTCTGGGATGCAGTTGTGCGCGTCCTAGGAAACAAAACACGCCATTAAAAAGGAGCTCGAGGCGGGAGTCACTCTGATCTCACTGGCGCCAAAATCCACGCACGTCGCTCCTGCCATAGATAACAAAACACATACTACAGAACTAACGCACACAGCTATAGGAATCATTTAAAGGATAAACATCCGGTATGTTTTAATTACACCGGGTAAGGCCATTCTCTTATGTTACCTTTCAAATATCATTAGTAATCAACATAGCAGCAGCAGCGGAGTGAATGAAACGGTGAAAGTGTGTGTTTTACCTCCATAGACACTCGCCAGCCCTGCATGGCCGCGAACCCGTAGGTCATGTTCTTATTCCCGCCGTTGCCTGTGCTTTTCTCCGTGTTGGGTTGAGACAAGTAAGCCCCCATGATGTATGTAATGAGGTATAGTGAAAGAAAAGGCTCGTAATTATAAAAGAAATCCGTTCAATTCCGGTTTGCTGACTTCAAATAAGGTAATACGTCTGCGCAAACTAGGTACTTGTCACATTTCAGTGTGCAGTGACCCTTAGAAGAGAGTAAACCGGTGTGTTACCCTGCTACTGCTGTTAGCTGACGGGCTGCTAACACTGGTGATGCTGCTGGAGTTTCTAGATGAACAATCACAGATGAAAGAAGAATCCAGATAAGTCTGTCCCAAACTGACAGAACTCACATTAAACACGAAGGGGAATAAATGTTGATTCGATTTGAGTCTCTTTTAAAACACAGAAAAGCTCTTAACACGTGTGAGTCAACATAATCAACAGTCCACCAGCAAACCCATATTACAGAGGGCGGACTTTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU42798 True 1676 lncRNA 0.43 2 2845604 2881743

Neighbor

gene id symbol gene type direction distance location
CI01000005_02761667_02765877 DLL1, DLD coding downstream 79264 2761272 ~ 2766340 (-)
CI01000005_02669952_02699226 ACTR2B, ACTR2, ACTR2.S, ACTR2A coding downstream 146378 2669114 ~ 2699226 (-)
CI01000005_02619187_02639895 SPRED2B, SPRED2 coding downstream 205709 2618085 ~ 2639895 (-)
CI01000005_02403966_02437498 NA coding downstream 408065 2403955 ~ 2437539 (-)
CI01000005_02312170_02375877 MEIS2, MEIS1 coding downstream 469727 2312170 ~ 2375877 (-)
CI01000005_02885300_02890664 NA coding upstream 3187 2884930 ~ 2890664 (-)
CI01000005_02940731_02974087 SYNDIG1 coding upstream 58514 2940257 ~ 2974171 (-)
CI01000005_03044395_03046540 TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L coding upstream 162620 3044363 ~ 3046804 (-)
CI01000005_03050086_03051694 TUBA3E, TUBA1C, BRAFLDRAFT_115374, TUBA1A, TUBA4, TUBA4L, TUBA1B, TUBA4A, TUBA1A.L coding upstream 168343 3050086 ~ 3051694 (-)
CI01000005_03163226_03166158 MEA1 coding upstream 280375 3162118 ~ 3166158 (-)
G37755 NA non-coding downstream 54187 2791161 ~ 2791417 (-)
G37730 NA non-coding downstream 87048 2758264 ~ 2758556 (-)
G37729 NA non-coding downstream 88765 2756624 ~ 2756839 (-)
G37723 NA non-coding downstream 103521 2741627 ~ 2742083 (-)
G37691 NA non-coding downstream 238765 2606552 ~ 2606839 (-)
G37798 NA non-coding upstream 25425 2907168 ~ 2907559 (-)
G37799 NA non-coding upstream 36555 2918298 ~ 2918650 (-)
G37815 NA non-coding upstream 127856 3009599 ~ 3011944 (-)
G37861 NA non-coding upstream 209289 3091032 ~ 3091255 (-)
CI01000005_01883894_01899867 NA other downstream 956328 1883222 ~ 1899867 (-)
G36628 NA other downstream 1181325 1663267 ~ 1664279 (-)
G36049 NA other downstream 1801932 1021295 ~ 1043672 (-)
G38510 NA other upstream 1323102 4204845 ~ 4206208 (-)
G38415 NA other upstream 1499495 4381238 ~ 4401110 (-)
G39515 NA other upstream 2952049 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 3598946 6481355 ~ 6483265 (-)
G40487 NA other upstream 4314052 7195795 ~ 7196428 (-)

Expression


Co-expression Network