CI01000005_02619187_02639895 (SPRED2B, SPRED2)


Basic Information

Item Value
gene id CI01000005_02619187_02639895
gene name SPRED2B, SPRED2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 2618085 ~ 2639895 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_02619187_02639895.mRNA
TGACAGTTACATTGTGCGCGTCAAAGCGGTGGTCATGACCCGAGATGACTCGAGTGGGGGATGGCTGGCACAGGAAGGTGGGGGCCTCAGCAGGGTGGGCGTCTGTAAGGTGATGCCTGCTGAGCTGACCGGCCACAGCGACTTCCTCATCCATGGCGAGCGCCTCAAAGACAAGCAGGTGATTTTGGAATGTTTCGTGAGGAAGGATCTGATCTACACGAAGGCCACACCCACATTTCACCACTGGAAGGTCGAAAACAAAAAATGCGGCTTGACGTTCCAGAGCCCTGCCGATGCCCGTGCCTTTGACAGAGGTGTGCGGAAAGCCTTGGAGGACATAACGGAGGGTTCCACAACTTCCTCTTCAACACTCCAAAATGAGGCTGAACTTGGAGATGATGACGTGTTCACAGACACACACATTCTGCGGCTGTCGGAAGCGAGTGGACGCACACTTCCACGTGAGGTCGTTGGCGCAGTTGTTGGGTTGGGGGCTGGTGTTGATGACCTTTCCATATATTGCCGTGTGAGGCAAGTGGCCGCAGACAGCAGAAATGCGGGTCTGGATTTACAGCTCGGGGCGATTATGTCGAGGGGAGTTGTTCCTCTGCTGGGATGTACATTCCTCCTGATGGTTCCTCTATATGGACGTGTGTGTGGTGTATTAATGTTTAGCTGTGAATCAATGCCACTTGCCCATGATGTAATGGAAAACTACATATACTCTGCAAAACACCTGTCTGTGATCGGGATTGTCTTCTTGACAAGAATGACCGCAGTTTCCTGGACAGTACATACTGCCACCGACAGCTCCTCAAACTCATCTCAGAAGAAGGAGCATACTACACAGCTAGTGGCCACCTCCACCTTCTACGAGCCTCACCCGCATCGCGGCATTCTGCAGTACCGGCCGCCTGAGCGCTACAGCTTGGATCAGAAGTTCTCCAGGAACCCCTTCCCCTTTGAGGATGAGGAGATCGTCCGAATCAACCCCCGGGAGCGCTGGCTGATCACAGGCTATGAGGACTACCGATACGCTTCCGTGCCGGATAAGTTCATCCAGCCTGAGGACTCGGACTCATACGTTCACATCGCTAAGAACGAACCCTTAAAGCACGACTACAACTACCCCTACGTGCCCAGCTCCGACTTCAGCCAGTGCGACCTCAAGAGCCATTGCGGTGGCGGCAGCGAAGTGGTGGCCACCCAGCCTCGAGCGTTCAAACTCAAGGGCAAGCGAAGGAAAGAGGACGGAGAGCGATCGCGCTGCGTCTACTGTCGGGACATGTTCAACCACGAGGAGAACCGACGCGGACAGTGCCACGACGCCCCCGACCCCATCCGGACCTGCATTCACCGGGTCAGCTTTATGTGGTGCGCCGACAGCATGCTCTACCACTGCATGTCCGACCCGGAAGGCGACTACTCGGACCCGTGCTCGTGCGACACCAGCGAGGAACGTTTCTGCCTTCGCTGGACGGCCCTGCTGGGTCTGTCGGTGCTGGCGCCCTGTCTGTGCTGCTACCCGCCGCTGCACTTGTGCCACCGCTGCGGCGTGGCCTGCGGTTGCTGCGGAGGAAAGCACAAGGCTGTCGGCTGAACCCCCTGCCCGTCCCGAACAATCCCTAAACACGCCCCTCGGAACGCTAGCACTGAGGAGGGCAGGAGCGGACAAAACCGACGCGGCCCGGTTGGAGCTTTTACTGTCTTTTACTTCACGGTCTCTCCTGGTTCCAGAAAACAATTGGTGCATTTAACTGGCTTGAAAAACATTCTCTTCTCTTTTGGTTTGATTTTATAAATATGAATATATATATATGTATATGTTCTTTTCTTTCCCTTTTGTTGTGGATGTTTCTCTCAGTTCCTTGTGAAAGAAATGGCTCTTTTGTCAGGTGGCTCCTGGAGCCTTCATGTCATGCATTACTTATGCAGGTACTTTATATTTTTTACACTGATTTGACTTTTCAAGAACTTGAATAGCTTGTTTCGGTTTTGCGTTCGTGGCCAGCAAACGGAGGAATTAGCTGTTTACTCTTCCTGAACAGGTCCTTGCATAAACTGGCATTTGTATCCCAAGCCCTTTAACCATTCAGAACAATAACAATGAGATTAGCTCGAGACACTAAACCTGTAGTTGGAAGCGTCCATTTGTAGTGCGTTTGTGGGAGAGCGTGTGTCGATGCCTGCGTGCGTGTTGTAAAGGAATGATAACATTGTATCACAGCATAGTATTGTTGTTATTATATTTAAGCCAAATTTACATAAGCTGCATCCAGAGTATATGTAAATACTGTATACTCATATGTATATGTTTCAAATCGAATTATTGTAATCACCTTCGACAGCCACGGCTGTGCTTCAGATAATGGACATTTTCCTCATAGAGTTGACTTATTTTGGATGCGAGGGTGGCTTTTGAGTTGATGCGTATTTGATATCCAAAGATTATTTTTGTCATATTTATTTTTCGCGGTCAATTGAATCACCAGCCAAAGGGAGAAAAAAAAAGAAAGAAACTATCAGTCTGTGGGCAAAAAAGCACAGCCATGACAGGGAAAGAGGAGTTTCTAGTGAGCCCACGCCACTTAAACGGTAAAAAAATCATTCTTTTAATCAACATTTTTATCTTGAAAAACAATCGAAATATCCTCACAAAAAATTACTTGATTTACTTGAGAAGCTAAATTGTGTAAAATAAA

Function

symbol description
spred2b Predicted to enable protein kinase binding activity. Predicted to be involved in negative regulation of peptidyl-threonine phosphorylation; positive regulation of DNA damage response, signal transduction by p53 class mediator; and regulation of protein deacetylation. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in plasma membrane and transport vesicle membrane. Is expressed in brain and spinal cord. Orthologous to human SPRED2 (sprouty related EVH1 domain containing 2).
spred2 Enables protein kinase binding activity. Involved in negative regulation of peptidyl-threonine phosphorylation. Predicted to be located in cytoplasmic vesicle.

GO:

id name namespace
GO:0030658 transport vesicle membrane cellular_component

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_02619187_02639895.mRNA True 2702 mRNA 0.49 7 2618085 2639895

Neighbor

gene id symbol gene type direction distance location
CI01000005_02403966_02437498 NA coding downstream 180546 2403955 ~ 2437539 (-)
CI01000005_02312170_02375877 MEIS2, MEIS1 coding downstream 242208 2312170 ~ 2375877 (-)
CI01000005_02240553_02245892 NA coding downstream 371250 2239837 ~ 2246835 (-)
CI01000005_02163205_02167196 NA coding downstream 450889 2162428 ~ 2167196 (-)
CI01000005_01944678_01957016 NA coding downstream 661069 1943961 ~ 1957016 (-)
CI01000005_02669952_02699226 ACTR2B, ACTR2, ACTR2.S, ACTR2A coding upstream 29219 2669114 ~ 2699226 (-)
CI01000005_02761667_02765877 DLL1, DLD coding upstream 121377 2761272 ~ 2766340 (-)
CI01000005_02885300_02890664 NA coding upstream 245035 2884930 ~ 2890664 (-)
CI01000005_02940731_02974087 SYNDIG1 coding upstream 300362 2940257 ~ 2974171 (-)
CI01000005_03044395_03046540 TUBA3E, TUBA3D, TUBA1C, TUBA4, TUBA4L, TUBA8L, TUBA4A, TUBA1A.L coding upstream 404468 3044363 ~ 3046804 (-)
G37691 NA non-coding downstream 11246 2606552 ~ 2606839 (-)
G37690 NA non-coding downstream 12842 2604600 ~ 2605243 (-)
G37698 NA non-coding downstream 17014 2600870 ~ 2601071 (-)
G37695 NA non-coding downstream 20114 2597685 ~ 2597971 (-)
G37694 NA non-coding downstream 20557 2597274 ~ 2597528 (-)
G37723 NA non-coding upstream 101732 2741627 ~ 2742083 (-)
G37729 NA non-coding upstream 116729 2756624 ~ 2756839 (-)
G37730 NA non-coding upstream 118369 2758264 ~ 2758556 (-)
G37755 NA non-coding upstream 151266 2791161 ~ 2791417 (-)
G37739 NA non-coding upstream 205709 2845604 ~ 2881743 (-)
CI01000005_01883894_01899867 NA other downstream 728809 1883222 ~ 1899867 (-)
G36628 NA other downstream 953806 1663267 ~ 1664279 (-)
G36049 NA other downstream 1574413 1021295 ~ 1043672 (-)
G38510 NA other upstream 1564950 4204845 ~ 4206208 (-)
G38415 NA other upstream 1741343 4381238 ~ 4401110 (-)
G39515 NA other upstream 3193897 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 3840794 6481355 ~ 6483265 (-)
G40487 NA other upstream 4555900 7195795 ~ 7196428 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006407 spred2b coding NC_007124.7 CM002897.2 5870644 ~ 5937034 (-)