Gene
RNA
| Item | Value |
|---|---|
| gene id | G37694 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000005 |
| NCBI id | null |
| chromosome length | 7630583 |
| location | 2597274 ~ 2597528 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU42742 | True | 255 | lncRNA | 0.35 | 1 | 2597274 | 2597528 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000005_02403966_02437498 | NA | coding | downstream | 159735 | 2403955 ~ 2437539 (-) |
| CI01000005_02312170_02375877 | MEIS2, MEIS1 | coding | downstream | 221397 | 2312170 ~ 2375877 (-) |
| CI01000005_02240553_02245892 | NA | coding | downstream | 350439 | 2239837 ~ 2246835 (-) |
| CI01000005_02163205_02167196 | NA | coding | downstream | 430078 | 2162428 ~ 2167196 (-) |
| CI01000005_01944678_01957016 | NA | coding | downstream | 640258 | 1943961 ~ 1957016 (-) |
| CI01000005_02619187_02639895 | SPRED2B, SPRED2 | coding | upstream | 20557 | 2618085 ~ 2639895 (-) |
| CI01000005_02669952_02699226 | ACTR2B, ACTR2, ACTR2.S, ACTR2A | coding | upstream | 71586 | 2669114 ~ 2699226 (-) |
| CI01000005_02761667_02765877 | DLL1, DLD | coding | upstream | 163744 | 2761272 ~ 2766340 (-) |
| CI01000005_02885300_02890664 | NA | coding | upstream | 287402 | 2884930 ~ 2890664 (-) |
| CI01000005_02940731_02974087 | SYNDIG1 | coding | upstream | 342729 | 2940257 ~ 2974171 (-) |
| G37688 | NA | non-coding | downstream | 2654 | 2594394 ~ 2594620 (-) |
| G37554 | NA | non-coding | downstream | 171986 | 2425012 ~ 2425288 (-) |
| G37544 | NA | non-coding | downstream | 182041 | 2414854 ~ 2415233 (-) |
| G37536 | NA | non-coding | downstream | 191828 | 2405194 ~ 2405446 (-) |
| G37468 | NA | non-coding | downstream | 214914 | 2380494 ~ 2382360 (-) |
| G37695 | NA | non-coding | upstream | 157 | 2597685 ~ 2597971 (-) |
| G37698 | NA | non-coding | upstream | 3342 | 2600870 ~ 2601071 (-) |
| G37690 | NA | non-coding | upstream | 7072 | 2604600 ~ 2605243 (-) |
| G37691 | NA | non-coding | upstream | 9024 | 2606552 ~ 2606839 (-) |
| G37723 | NA | non-coding | upstream | 144099 | 2741627 ~ 2742083 (-) |
| CI01000005_01883894_01899867 | NA | other | downstream | 707998 | 1883222 ~ 1899867 (-) |
| G36628 | NA | other | downstream | 932995 | 1663267 ~ 1664279 (-) |
| G36049 | NA | other | downstream | 1553602 | 1021295 ~ 1043672 (-) |
| G38510 | NA | other | upstream | 1607317 | 4204845 ~ 4206208 (-) |
| G38415 | NA | other | upstream | 1783710 | 4381238 ~ 4401110 (-) |
| G39515 | NA | other | upstream | 3236264 | 5833792 ~ 5834539 (-) |
| CI01000005_06481721_06483251 | NA | other | upstream | 3883161 | 6481355 ~ 6483265 (-) |
| G40487 | NA | other | upstream | 4598267 | 7195795 ~ 7196428 (-) |
