Gene
RNA
| Item | Value |
|---|---|
| gene id | G37511 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000005 |
| NCBI id | null |
| chromosome length | 7630583 |
| location | 2291151 ~ 2291402 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU42558 | True | 252 | lncRNA | 0.48 | 1 | 2291151 | 2291402 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000005_02240553_02245892 | NA | coding | downstream | 44316 | 2239837 ~ 2246835 (-) |
| CI01000005_02163205_02167196 | NA | coding | downstream | 123955 | 2162428 ~ 2167196 (-) |
| CI01000005_01944678_01957016 | NA | coding | downstream | 334135 | 1943961 ~ 1957016 (-) |
| CI01000005_01924855_01938284 | NA | coding | downstream | 352867 | 1924678 ~ 1938284 (-) |
| CI01000005_01883894_01899867 | NA | coding | downstream | 391284 | 1883222 ~ 1899867 (-) |
| CI01000005_02312170_02375877 | MEIS2, MEIS1 | coding | upstream | 20768 | 2312170 ~ 2375877 (-) |
| CI01000005_02403966_02437498 | NA | coding | upstream | 112553 | 2403955 ~ 2437539 (-) |
| CI01000005_02619187_02639895 | SPRED2B, SPRED2 | coding | upstream | 326683 | 2618085 ~ 2639895 (-) |
| CI01000005_02669952_02699226 | ACTR2B, ACTR2, ACTR2.S, ACTR2A | coding | upstream | 377712 | 2669114 ~ 2699226 (-) |
| CI01000005_02761667_02765877 | DLL1, DLD | coding | upstream | 469870 | 2761272 ~ 2766340 (-) |
| G36740 | NA | non-coding | downstream | 171492 | 2041337 ~ 2119659 (-) |
| G36741 | NA | non-coding | downstream | 246191 | 2043622 ~ 2044960 (-) |
| G36692 | NA | non-coding | downstream | 272518 | 2018419 ~ 2018633 (-) |
| G36690 | NA | non-coding | downstream | 274660 | 2016269 ~ 2016491 (-) |
| G36517 | NA | non-coding | downstream | 289594 | 1922415 ~ 2001557 (-) |
| G37513 | NA | non-coding | upstream | 2299 | 2293701 ~ 2293961 (-) |
| G37468 | NA | non-coding | upstream | 89092 | 2380494 ~ 2382360 (-) |
| G37536 | NA | non-coding | upstream | 113792 | 2405194 ~ 2405446 (-) |
| G37544 | NA | non-coding | upstream | 123452 | 2414854 ~ 2415233 (-) |
| G37554 | NA | non-coding | upstream | 133610 | 2425012 ~ 2425288 (-) |
| G36628 | NA | other | downstream | 626872 | 1663267 ~ 1664279 (-) |
| G36049 | NA | other | downstream | 1247479 | 1021295 ~ 1043672 (-) |
| G38510 | NA | other | upstream | 1913443 | 4204845 ~ 4206208 (-) |
| G38415 | NA | other | upstream | 2089836 | 4381238 ~ 4401110 (-) |
| G39515 | NA | other | upstream | 3542390 | 5833792 ~ 5834539 (-) |
| CI01000005_06481721_06483251 | NA | other | upstream | 4189287 | 6481355 ~ 6483265 (-) |
| G40487 | NA | other | upstream | 4904393 | 7195795 ~ 7196428 (-) |
