G36517


Basic Information

Item Value
gene id G36517
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1922415 ~ 2001557 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU41478
AAAAAAAACAAAACAAAAAACAAAGGCTCAGTCATAACAGTGTGAAGCACAAGGATAAAATTTGACATTTATCAACATTTAGGGAGCAGTGACTGATCAATCAGTGAGGGGCAACAATTAGTGGATCAAATGAAGAATGTCAACATAACTTTCCCCATTAGCTCATTAATAACAGACACAAAGTGACAAAGTTAGAGAAATCAACATCCATTATGACCAAAATGTTACCCATTAAAAAATAAAAGTTTAAAATCACTGGCCTTGCAGATGTATTTGCAGTTAAAGAGGGAGGCAGGGATATTAGAGCATCCTAAATCATTTCATCTTCATTCTCAGGGGTGTCATACTCCTGCTTCCATTAAAAGGCACAATCTATTTCCATATATACTTCTTGAAACGCTCAGATGCATGTGCATATTTAAAGAAGCATTGTACAACTAAAAGAAATTACTTTTAAAAATAAAAATCCCCACAATAGCGCACACAAAAAAAAGTTCCAGTTTCAGTGCAAGTATTTCTAATATAGCTACACCTGTCAGTCTTACCTCCCTCCAAACCCCTGCCCCCTCAAAAGTGTATAGGTCCTTTCAGTAAAAGCTTTCTTTCCTCTGAAACAAGGCTGTTAAATTAGCTGTGACCGATTAATTACAAATGCCACTTTTTAAAAGAAAACCCAAGTATTGATTTCGAAACAGAAAAGCAGCGCTACAGCAATTCTCCTTTAGTTTCCTAAGATTGTTCTGGAACGCTCTTCTCATCCTTTAGCTCCATACGTGACGTCTGCAGTGGTCCAAGGCCTACGACACAAACACCAAAGCTTAAT

Function

NR:

description
PREDICTED: transcription factor MafB-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU41478 True 823 lncRNA 0.37 2 1922415 2001557

Neighbor

gene id symbol gene type direction distance location
CI01000005_01883894_01899867 NA coding downstream 22548 1883222 ~ 1899867 (-)
CI01000005_01761513_01769840 NA coding downstream 152564 1761187 ~ 1769851 (-)
CI01000005_01723641_01729676 NA coding downstream 192079 1723338 ~ 1730336 (-)
CI01000005_01677318_01687512 MCU coding downstream 234816 1677161 ~ 1687599 (-)
CI01000005_01674196_01674495 NA coding downstream 247920 1673439 ~ 1674495 (-)
CI01000005_02163205_02167196 NA coding upstream 160871 2162428 ~ 2167196 (-)
CI01000005_02240553_02245892 NA coding upstream 238280 2239837 ~ 2246835 (-)
CI01000005_02312170_02375877 MEIS2, MEIS1 coding upstream 310613 2312170 ~ 2375877 (-)
CI01000005_02403966_02437498 NA coding upstream 402398 2403955 ~ 2437539 (-)
CI01000005_02619187_02639895 SPRED2B, SPRED2 coding upstream 616528 2618085 ~ 2639895 (-)
G36523 NA non-coding downstream 4739 1913845 ~ 1917676 (-)
G36525 NA non-coding downstream 42929 1878561 ~ 1879486 (-)
G36640 NA non-coding downstream 143329 1778873 ~ 1779086 (-)
G36631 NA non-coding downstream 154068 1767923 ~ 1768347 (-)
G36535 NA non-coding downstream 201819 1705218 ~ 1720596 (-)
G36690 NA non-coding upstream 14712 2016269 ~ 2016491 (-)
G36692 NA non-coding upstream 16862 2018419 ~ 2018633 (-)
G36740 NA non-coding upstream 39780 2041337 ~ 2119659 (-)
G36741 NA non-coding upstream 42065 2043622 ~ 2044960 (-)
G37511 NA non-coding upstream 289594 2291151 ~ 2291402 (-)
G36628 NA other downstream 258136 1663267 ~ 1664279 (-)
G36049 NA other downstream 878743 1021295 ~ 1043672 (-)
G38510 NA other upstream 2203288 4204845 ~ 4206208 (-)
G38415 NA other upstream 2379681 4381238 ~ 4401110 (-)
G39515 NA other upstream 3832235 5833792 ~ 5834539 (-)
CI01000005_06481721_06483251 NA other upstream 4479132 6481355 ~ 6483265 (-)
G40487 NA other upstream 5194238 7195795 ~ 7196428 (-)

Expression


Co-expression Network