XLOC_006344 (plek)


Basic Information

Item Value
gene id XLOC_006344
gene name plek
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1070705 ~ 1085973 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012349
CTGCAGGCTGTTTTAAACACACTTCAACAGTGTAGAGACATGGAGCCAACAACTATCAGAGAAGGATACTTGGTCAAAAAGGGCACTGTGCTGAATTCATGGAAAGCGGTGTGGGTTGTGTTAAAAGACGATGCTATTGAGTTCTTTAAGAAGAAGACGGACAGAAACGCAAAGGGGATGATCCCTCTGAAGGGGGCGACACTCACCAGCCCCTGCCAGGACTTCAGCAAGAGAGCGCTGGTTTTCAAGGTGTCTACAGCCAAGAACCAGGATCATTACTTCCAAGCGACGCACCTGGAGGAGCGCGAGCACTGGGTGAAAGACATCCGCAGGGCCATCACCTGCTTACAGGGAGGAAAAAAGTTTGCCAGAAAGTCAACACGACGATCCATTCGGCTACCAGACAGTGTTAACCTGAGTGAACTGTACGTGTGCATGAAGGATCCAGACAGAGGAGTTAAAGAGCTGAAGCTGGAGAAGGACAAAAGACTATTCAACCACTGTTTCACAGGGAGCACCGTCATCGACTGGCTGATCTCTGAGGAAAAGTCCAGAAACCGAACCGAAGCCGTGATGTTAGCCAGCGGACTCCTAAATGAGGGATTCCTGCAGCCGGCAGGAGACACGTCCAAAGACGGTGCAGAAAAAGGAGCCGAGAGCGTTTTCTTGGACCAGACTGAGGCCTTTTATTACTTTGCGGACAGTGGTTTCTTCTGTGAGGGTTACTCCAGTGATGAAGACGTGATTATGAAGGAGGAGTTCAGAGGTGCGATAGTCAAACAGGGCTGCTTGCTGAAACAGGGTCATCGGAGAAAAAACTGGAAAGTCCGAAAGTTTATCCTGAGAGATGATCCTGCTTATATCCACTACTATGATCCCAGCAAGggtGAAGATGATCCTCTGGGCTCCATTCATCTGCGTGGATCAGTTGTGACTGCGGTGGAGTTTGTGCCTGATGCCAAGAGGCACGAAGTTGATGGGAATCTGTTCGAGATCATCACTTCAGACGAGATACACTACTACCTGCAGGCGGCCACAGCTGACGAGCGCAAGGACTGGATCAGAGCCGTCCAAAGTGTGGCCAAATCcggaaaataaacacaaattagtCATTACAGACATGCTTTAGATTGTCTAAATATAAGTCTACTGTTTAATTTTACcagaaataataatttaactgtTTAACCTTTACATTTGCACAGAAATATCTTTCTtactttagagtttttgtcttgtttccagtcaaAATGTCTAACAATTCTTGAATGAAGAAGCATTTCTAGACAAGCAAtacaatattgtcttgttttcagaaataatgagacaaaatgaagtgagtttttccttaaaacaagcaaaataataaatcaataaatcaataaaataatcgtatatcaaaattaaaaacaagaaTTATTTCCCTTCCCCTATTGgcagatttttttgcttgttttaaggaaaagctcacgtaattttgactcattatttctgaaaacggCACAATATTGTTTGCTCATCTAGAAAATTCTTCTAGAAACGAACAAAACACCAAGCTAAAAGCATTTCTTTGCAGTTTAACAACCACATGACATGTTTcgtcaacaaaaaaataacattgcAGTAAGCGGATGTGGGCAAATGTGCCGTTTCACCAGAGATTGATAATGAAGGCAGAACTGCTCATCACTATCAGCACTGCAAACTGTGTAAAGGAAATCTTCAGTGTCCAGCATTCTCCTgcttttgtgttttgttatttcatttttatttatagctGTAGCACTTCCTGGATTTTTTTCTTGGAGGTGGTCAATTTATAATTGTTGTAACAGTCTGGTggtgtaataataacaataaataaataaataaataaataaataaataaataaatgaataaat
>TCONS_00012350
AGCCTTCGAGTCCTGCAGGCTGTTTTAAACACACTTCAACAGTGTAGAGACATGGAGCCAACAACTATCAGAGAAGGATACTTGGTCAAAAAG

Function

symbol description
plek Predicted to be involved in actin cytoskeleton reorganization. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Is expressed in blood. Orthologous to human PLEK (pleckstrin).

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005886 plasma membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1506 Predicted to be involved in actin cytoskeleton reorganization. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Is expressed in blood. Orthologous to human PLEK (pleckstrin).

Ensembl:

ensembl_id ENSDARG00000104325

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012349 False 1902 mRNA 0.41 9 1070705 1085961
TCONS_00012350 True 93 mRNA 0.44 1 1085881 1085973

Neighbor

gene id symbol gene type direction distance location
XLOC_006343 BFSP1 coding downstream 78247 985442 ~ 992458 (-)
XLOC_006342 NA coding downstream 192897 875945 ~ 877808 (-)
XLOC_006341 AL929536.5 coding downstream 200897 866293 ~ 869808 (-)
XLOC_006340 AL929536.6 coding downstream 205512 861730 ~ 865193 (-)
XLOC_006339 zgc:163080 coding downstream 214004 852289 ~ 856701 (-)
XLOC_006345 NA coding upstream 10511 1096484 ~ 1098530 (-)
XLOC_006346 NA coding upstream 34216 1120189 ~ 1126101 (-)
XLOC_006347 pno1 coding upstream 39212 1125185 ~ 1130096 (-)
XLOC_006348 BX323887.1 coding upstream 50489 1136462 ~ 1175570 (-)
XLOC_006349 psmb1 coding upstream 56751 1142724 ~ 1151410 (-)
XLOC_006338 rn7sk misc downstream 244480 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9178768 10264741 ~ 10264905 (-)
XLOC_006334 NA non-coding downstream 575788 489738 ~ 494917 (-)
XLOC_006332 NA non-coding downstream 624816 443374 ~ 445889 (-)
XLOC_006330 NA non-coding downstream 639109 430289 ~ 431596 (-)
XLOC_006329 NA non-coding downstream 649096 397310 ~ 421609 (-)
XLOC_006350 NA non-coding upstream 174513 1260486 ~ 1269605 (-)
XLOC_006351 NA non-coding upstream 184955 1270928 ~ 1341882 (-)
XLOC_006352 NA non-coding upstream 219378 1305351 ~ 1308020 (-)

Expression


Co-expression Network