XLOC_006329


Basic Information

Item Value
gene id XLOC_006329
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 397310 ~ 421609 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013451
CTCCATCATTATGATCATTGCTGGTGACTGTAGCTCACAGTGAGATGACGTCCTGCGGGAAGCTCCTCGGTATGGCTCCGGTATTGGCGCATAACGCGTTATCCTTGCTGCAGGTGCAGGGCGCGGGGCAGCGGGAGCTCCTCCTCCGGCCGCCGAGCACCAGCGCCGCCAGCAGCACGCACAGCACCGCCGCCCGCCGCAAACACATCATCCCGGACACACAGCCGCTCACCGGGGGCTCATCACCGGCACACGGCACCGAAGCGACGGCTCAAGATGAGCAGATATTACACGGCGATTATTGTGAGGCGGATCCGTTATGATCTGCACCAGCGGTAGCAGCATCCATCCATACAAACACAATCAGAGTCACGGACGCAGAGTGGGCGGGGCTACGCGGATTCTCGCTTTTGTAAATCTGGCTTTAAATGACGGATCTTTCTCATTCTTAAACCGCGGCTCATGCTGCTCCAGTAACACTCGGACCACAAACGTCTGCAGCTGAACAAATAAGTATTTTGCTTGGTGAGCCTCAGAGGAAACAGCCTGAAACAACAGTCACTCAGtgctggCCTCATGTAGCGTACTGCAGCTAGGCTTGAAGAAGCAGGTTTTGCATCTGGCGATGTTCCAGCTGTTCATCCGACATTACTGCAGATTGTCACCAGAGGGCAGCACCACCCCTTCCGAGCCTGCGCACACACAACACAATGTGAAAC
>TCONS_00013449
CTCCATCATTATGATCATTGCTGGTGACTGTAGCTCACAGTGAGATGACGTCCTGCGGGAAGCTCCTCGGTATGGCTCCGGTATTGGCGCATAACGCGTTATCCTTGCTGCAGGTGCAGGGCGCGGGGCAGCGGGAGCTCCTCCTCCGGCCGCCGAGCACCAGCGCCGCCAGCAGCACGCACAGCACCGCCGCCCGCCGCAAACACATCATCCCGGACACACAGCCGCTCACCGGGGGCTCATCACCGGCACACGGCACCGAAGCGACGGCTCAAGATGAGCAGATATTACACGGCGATTATTGTGAGGCGGATCCGTTATGATCTGCACCAGCGGTAGCAGCATCCATCCATACAAACACAATCAGAGTCACGGACGCAGAGTGGGCGGGGCTACGCGGATTCTCGCTTTTGTAAATCTGGCTTTAAATGACGGATCTTTCTCATTCTTAAACGTTAAGCTCGTTTGcatttttgatgtattttaaaattagtaTCTCATAAAAAATTACGCTCAGATTGAAGTCGAGTTGTCACGTGACTCCTGTTTCTTTTCTCAGCGCGGCTCATGCTGCTCCAGTAACACTCGGACCACAAACGTCTGCAGCTGAACAAATAAGTATTTTGCTTGGTGAGCCTCAGAGGAAACAGCCTGAAACAACAGTCACTCAGtgctggCCTCATGTAGCGTACTGCAGCTAGGCTTGAAGAAGCAGGTTTTGCATCTGGCGATGTTCCAGCTGTTCATCCGACATTACTGCAGATTGTCACCAGAGGGCAGCACCACCCCTTCCGAGCCTGCGCACACACAACACAATGTGAAAC
>TCONS_00013450
GGCAGCGGGAGCTCCTCCTCCGGCCGCCGAGCACCAGCGCCGCCAGCAGCACGCACAGCACCGCCGCCCGCCGCAAACACATCATCCCGGACACACAGCCGCTCACCGGGGGCTCATCACCGGCACACGGCACCGAAGCGACGGCTCAAGATGAGCAGATATTACACGGCGATTATTGTGAGGCGGATCCGTTATGATCTGCACCAGCGGTAGCAGCATCCATCCATACAAACACAATCAGAGTCACGGACGCAGAGTGGGCGGGGCTACGCGGATTCTCGCTTTTGTAAATCTGGCTTTAAATGACGGATCTTTCTCATTCTTAAACGTTAAGCTCGTTTGcatttttgatgtattttaaaattagtaTCTCATAAAAAATTACGCTCAGATTGAAGTCGAGTTGTCACGTGACTCCTGTTTCTTTTCTCAGCGCGGCTCATGCTGCTCCAGTAACACTCGGGTGAGGCCTGCCGcgatgtttatttacttatttatttatttctacatGAACACTTGGAACTGCTTAATTTAAAAGTGTCCATTCATATTTTAGACCACAAACGTCTGCAGCTGAACAAATAAGTATTTTGCTTGGTGAGCCTCAGAGGAAACAGCCTGAAACAACAGTCACTCAGtgctggCCTCATGTAGCGTACTGCAGCTAGGCTTGAAGAAGCAGGTTTTGCATCTGGCGATGTTCCAGCTGTTCATCCGACATTACTGCAGATTGTCACCAGAGGGCAGCACCACCCCTTCCGAGCCTGCGCACACACAACACAATGTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013451 False 719 lncRNA 0.56 5 397310 421609
TCONS_00013449 False 824 lncRNA 0.53 4 397310 421609
TCONS_00013450 True 790 lncRNA 0.50 3 397311 421483

Neighbor

gene id symbol gene type direction distance location
XLOC_006328 NA coding downstream 14090 377547 ~ 383220 (-)
XLOC_006327 VIT coding downstream 20054 353175 ~ 377256 (-)
XLOC_006326 NA coding downstream 47202 337811 ~ 350108 (-)
XLOC_006325 zgc:171534 coding downstream 59992 330611 ~ 337318 (-)
XLOC_006324 ddx21 coding downstream 67306 319575 ~ 330004 (-)
XLOC_006330 NA coding upstream 8680 430289 ~ 431596 (-)
XLOC_006331 EFEMP1 coding upstream 11181 432790 ~ 438705 (-)
XLOC_006332 NA coding upstream 21765 443374 ~ 445889 (-)
XLOC_006333 heatr5b coding upstream 28393 450002 ~ 479130 (-)
XLOC_006334 NA coding upstream 68129 489738 ~ 494917 (-)
XLOC_006338 rn7sk misc upstream 404295 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9843132 10264741 ~ 10264905 (-)
XLOC_006323 NA non-coding downstream 80276 307085 ~ 317034 (-)
XLOC_006320 NA non-coding downstream 149957 243339 ~ 247353 (-)
XLOC_006318 NA non-coding downstream 204901 189989 ~ 192409 (-)
XLOC_006342 NA non-coding upstream 454336 875945 ~ 877808 (-)
XLOC_006345 NA non-coding upstream 674875 1096484 ~ 1098530 (-)

Expression


Co-expression Network