XLOC_006318


Basic Information

Item Value
gene id XLOC_006318
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 189989 ~ 192409 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013710
AAAGAAGTTCAGAGTGCACATCAATCAAGTTCGTCGTTAATGGATCTATCGTTGACAAACGGAGAGTACGATTGTAGTGCCAAAGATCAAGCTGCAGATCTAAAGGCTCATTACAGGTGCCGCAACAATGTTCATGTTTGATCAGGCATGGCTTGTCAACAACGGCTGTCGAAAAACACATGCTGTGGGGTAAAAATGGGTTGCACTTTGGTAAAGACTGTAGACAAAAGGGGAGGATCAAGTAGgaaCATTGATCCCCATATTCCCACTTACTCA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0031399 regulation of protein modification process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0032268 regulation of cellular protein metabolic process biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013710 True 276 lncRNA 0.43 4 189989 192409

Neighbor

gene id symbol gene type direction distance location
XLOC_006317 NA coding downstream 9714 179232 ~ 180275 (-)
XLOC_006316 FO904997.1 coding downstream 56469 129128 ~ 133520 (-)
XLOC_006315 NA coding downstream 63168 125612 ~ 126821 (-)
XLOC_006314 NA coding downstream 69230 115909 ~ 120759 (-)
XLOC_006313 pole2 coding downstream 103142 83010 ~ 86847 (-)
XLOC_006319 rtn4b coding upstream 23911 216320 ~ 226393 (-)
XLOC_006320 NA coding upstream 50930 243339 ~ 247353 (-)
XLOC_006321 slc30a6 coding upstream 77413 269822 ~ 280827 (-)
XLOC_006322 chs1 coding upstream 93465 285874 ~ 303137 (-)
XLOC_006323 NA coding upstream 114676 307085 ~ 317034 (-)
XLOC_006338 rn7sk misc upstream 633495 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 10072332 10264741 ~ 10264905 (-)
XLOC_006309 NA non-coding downstream 156795 32443 ~ 33194 (-)
XLOC_006326 NA non-coding upstream 145402 337811 ~ 350108 (-)
XLOC_006328 NA non-coding upstream 185138 377547 ~ 383220 (-)
XLOC_006329 NA non-coding upstream 204901 397310 ~ 421609 (-)

Expression


Co-expression Network