XLOC_006317


Basic Information

Item Value
gene id XLOC_006317
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 179232 ~ 180275 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013709
tgtgaaagacttgtgaaagaacttgcagactgcgggcctctagtaggctcttgcagacacattggaAATCTAAAAGACGCTGTATgtctgcagattaaccaacacgtctcaataaaggaattctgcttgtttcgagtctcctggactgggttctcttctttttcactcatttatttttttttacaacagttcaCAAAAACGagacgagaaaaaaaaaacctaagtgTTCTTAAAACCCAAAAACCTACAAAAACAAACCAGGTTTTCTTTCTACTTGAGGTCATTTCTTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaacaaacctggtTTTCTTTCTCAATAAGGTCATTTCATTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaaaaacaaacaaacctggtTTTCTTTCTCAATAAGGTCATTTCATTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaacaaacaaacaaacaaacaaacctggtTTTCTTTCTCAATAAGGTCATTTCTTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaaaaacaaacaaacctggtTTTCTTTCTCAATAAGGTCATTTCATTTGGTATTTCATTTAActtattttggttattttacaaacaaacaaacctggtTTTCTTTCTCAATAAGGTCATTTCATTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaaaaacaaacaaacctggtTTTCTTTCTCAATAAGGTCATTTCATTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaacaaacaaacaaacaaacaaacttggtTTTCTTTCTACTTGAGGTCATTTCTTTGGTATTTCTGGTCTATTTTGGGTCATTTCActtattttggttattttacaaacaaacaaac

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032924 activin receptor signaling pathway biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013709 True 1044 lncRNA 0.31 1 179232 180275

Neighbor

gene id symbol gene type direction distance location
XLOC_006316 FO904997.1 coding downstream 45712 129128 ~ 133520 (-)
XLOC_006315 NA coding downstream 52411 125612 ~ 126821 (-)
XLOC_006314 NA coding downstream 58473 115909 ~ 120759 (-)
XLOC_006313 pole2 coding downstream 92385 83010 ~ 86847 (-)
XLOC_006311 gtf2a1l coding downstream 134809 40508 ~ 44423 (-)
XLOC_006318 NA coding upstream 9714 189989 ~ 192409 (-)
XLOC_006319 rtn4b coding upstream 36045 216320 ~ 226393 (-)
XLOC_006320 NA coding upstream 63064 243339 ~ 247353 (-)
XLOC_006321 slc30a6 coding upstream 89547 269822 ~ 280827 (-)
XLOC_006322 chs1 coding upstream 105599 285874 ~ 303137 (-)
XLOC_006338 rn7sk misc upstream 645629 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 10084466 10264741 ~ 10264905 (-)
XLOC_006309 NA non-coding downstream 146038 32443 ~ 33194 (-)
XLOC_006323 NA non-coding upstream 126810 307085 ~ 317034 (-)
XLOC_006326 NA non-coding upstream 157536 337811 ~ 350108 (-)
XLOC_006328 NA non-coding upstream 197272 377547 ~ 383220 (-)

Expression


Co-expression Network