XLOC_006328


Basic Information

Item Value
gene id XLOC_006328
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 377547 ~ 383220 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013448
cgcgcgcgcacgcacacactgaCAGCTCCAGCGGTATGTTTGGAGTTTCACAGCGTGTTTGCGCGCGAGTGGAGCAGCTCCACAGGAACAGAAGAGCGTCTTCACAGCAGATCTGACTGCATTTACTGGAGATTACGTCAAGATGAGTAAAGCAGCGCTCTCCGCCATCTGCATCGGTAGGCTTTGCTTTATTTCTTGCGTTAGTTTTATGcccatattt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013448 True 220 lncRNA 0.51 2 377547 383220

Neighbor

gene id symbol gene type direction distance location
XLOC_006327 VIT coding downstream 291 353175 ~ 377256 (-)
XLOC_006326 NA coding downstream 27439 337811 ~ 350108 (-)
XLOC_006325 zgc:171534 coding downstream 40229 330611 ~ 337318 (-)
XLOC_006324 ddx21 coding downstream 47543 319575 ~ 330004 (-)
XLOC_006323 NA coding downstream 60513 307085 ~ 317034 (-)
XLOC_006329 NA coding upstream 14090 397310 ~ 421609 (-)
XLOC_006330 NA coding upstream 47069 430289 ~ 431596 (-)
XLOC_006331 EFEMP1 coding upstream 49570 432790 ~ 438705 (-)
XLOC_006332 NA coding upstream 60154 443374 ~ 445889 (-)
XLOC_006333 heatr5b coding upstream 66782 450002 ~ 479130 (-)
XLOC_006338 rn7sk misc upstream 442684 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9881521 10264741 ~ 10264905 (-)
XLOC_006320 NA non-coding downstream 130194 243339 ~ 247353 (-)
XLOC_006318 NA non-coding downstream 185138 189989 ~ 192409 (-)
XLOC_006317 NA non-coding downstream 197272 179232 ~ 180275 (-)
XLOC_006334 NA non-coding upstream 106518 489738 ~ 494917 (-)
XLOC_006342 NA non-coding upstream 492725 875945 ~ 877808 (-)

Expression


Co-expression Network