RNA id: TCONS_00013448


Basic Information

Item Value
RNA id TCONS_00013448
length 220
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id XLOC_006328
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 377547 ~ 383220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgcgcgcgcacgcacacactgaCAGCTCCAGCGGTATGTTTGGAGTTTCACAGCGTGTTTGCGCGCGAGTGGAGCAGCTCCACAGGAACAGAAGAGCGTCTTCACAGCAGATCTGACTGCATTTACTGGAGATTACGTCAAGATGAGTAAAGCAGCGCTCTCCGCCATCTGCATCGGTAGGCTTTGCTTTATTTCTTGCGTTAGTTTTATGcccatattt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012330 lncRNA downstream 27600 348937 ~ 349947 (-) False XLOC_006326
TCONS_00013713 lncRNA downstream 39008 337811 ~ 338539 (-) False XLOC_006326
TCONS_00013712 lncRNA downstream 60513 307085 ~ 317034 (-) True XLOC_006323
TCONS_00013711 lncRNA downstream 60527 307085 ~ 317020 (-) False XLOC_006323
TCONS_00012317 lncRNA downstream 89640 287111 ~ 287907 (-) False XLOC_006322
TCONS_00013451 lncRNA upstream 14090 397310 ~ 421609 (-) False XLOC_006329
TCONS_00013449 lncRNA upstream 14090 397310 ~ 421609 (-) False XLOC_006329
TCONS_00013450 lncRNA upstream 14091 397311 ~ 421483 (-) True XLOC_006329
TCONS_00013714 lncRNA upstream 47069 430289 ~ 431596 (-) True XLOC_006330
TCONS_00013715 lncRNA upstream 60154 443374 ~ 445889 (-) True XLOC_006332
TCONS_00012332 mRNA downstream 291 353175 ~ 377256 (-) False XLOC_006327
TCONS_00012333 mRNA downstream 16351 353584 ~ 361196 (-) True XLOC_006327
TCONS_00012329 mRNA downstream 27439 347984 ~ 350108 (-) False XLOC_006326
TCONS_00012327 mRNA downstream 27522 346145 ~ 350025 (-) False XLOC_006326
TCONS_00012324 mRNA downstream 27545 337814 ~ 350002 (-) False XLOC_006326
TCONS_00012334 mRNA upstream 49570 432790 ~ 438705 (-) True XLOC_006331
TCONS_00012335 mRNA upstream 66782 450002 ~ 479129 (-) False XLOC_006333
TCONS_00012336 mRNA upstream 75299 458519 ~ 479130 (-) True XLOC_006333
TCONS_00012337 mRNA upstream 133038 516258 ~ 533243 (-) False XLOC_006335
TCONS_00012339 mRNA upstream 172101 555321 ~ 638485 (-) False XLOC_006336
TCONS_00012338 other upstream 149945 533165 ~ 554033 (-) True XLOC_006335
TCONS_00012343 other upstream 442684 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012358 other upstream 1026566 1409786 ~ 1414805 (-) False XLOC_006356
TCONS_00012374 other upstream 2467919 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 2471105 2854325 ~ 2856272 (-) True XLOC_006369

Expression Profile

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