XLOC_006322 (chs1)


Basic Information

Item Value
gene id XLOC_006322
gene name chs1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 285874 ~ 303137 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012315
GTTCTCTGCAGTCCCGGATGCTTCAGTCTGTTCAGAGGATCTGCACTGATGGACGACAACGTACTGAAGAGATACACAACTAAAGCTACTCGCGCATCTGAGTATGTGCAGTACGATCAAGgggagGACCGCTGGCTGTGCACTCTCCTCCTGCAGCAGGGCTGGCGGGTGGAGTATAACGCCGCCTCGGACGCCTACACCAACTCTCCGCAGGAGTTCAAGGAGTTTTACAACCAGAGGCGGCGCTGGGGTCCGTCAACCCTGGCCAACACCCTGGACCTGCTGCACAGCGGGAAGGAGACGGTCAAGAGGAACACCTCCATATCCATGCTCTACATCCTCTATCAGATCTTCACCGTGGCCTCCTCCATCCTGGGACCCGCGTCTGTCACGCTCATGATCGCAGGAGCGTTCCAGTTTGTGTTTGGCGTGTCCGGCACTCTCTCCATCATAATCGCTGTCATCCCTCCAGTGTTTTACATGCTCATCTGTTTCCTGGCCAAACCCAACCTACAAATCACCATCGCCGCCATTCTCAGCGTCATTTACGCCTTCCTGATGACGGCATCCTTCTTCGCCATCATCGGTGACATGGTGATCCAGGGCACATTCATAACCCCCACCGGCCTGTTCCTGGTGTCCGGCGCTATCCTGTACATGGTGACGGCGGTGCTCCACCCGCAGGAGTGCACGCTGATCATCTACGGCCTGATGTACTTCATCTGCATCCCCAGCGGGTATCTCCTGCTCACCATATACTCGCTGGTCAACATGCACATCGTGTCCTGGGGCACGCGGGAGTCCACCAAAGGCAAGGAGCAGAAAAAGCAGGTGGGTGTGGTGTGCAACCGAGACTGCAGGATGTGCTGCTGGGATGTCAAGATCCAGGTCACGCAGGAGACCGAGAACCTCCTCCTTCAGCAAATGCAGCAGGCCGTCAATCCCACCGCCGCCGCCGCAGCTAAAGCGGAGCCGGAAGAGCCGGCGACTCTGAGCGCAGCTCCAGAACACAGCAGTGTGGAGATCAGCAGACACGTCCAGGAGAAAAACATGGAGAACAAGAAGGACCAGAGCAAGGAGAACCTCAACAAGGACAACAAGGAGAGAGACTCAGAGTCTGAGAGAAGCAGCAGCTCCAGCAGCTCTGAGAAGAAGATGGACACGTTCAATGACGACACAGACTATGAGGACACAGACTacgatgatgatgacgacgacgaGGATTATGATTATAATACTGTGGAGCCCAAAGAAGTTGTGCCTGAGAGCGCCTGGGTGGAGCCCGTGAAGAGGGAGTTCCTGAAGAAGCTGACCTACGCCAATCTGAAGAGGAACCTTCAGGAGCAGATCCGCTACACGCTGAGGAACAAGAACCAGGAGGACCTGTGCGAGGAGCTGGTGCTGATCCTGACCGACACGCTGAACGACGAGCTGAAGGATAAAGTGGGTCCTGAAGACGTCTTGACCGAGACGCAGCTGGAGGAACTGCAGTATGCGCTCAATGAAGCGGCGCGGCGCATCGTCAAGACCAACCGCATCGAGACCGGCTCACAGCGGGTGGAGCGGCGGGTCAAACGGGGCATCGAGAGGACGCTGGTGGCGCCGCAGGTGGAGAAACTGTCAGAGGACGAGCAGGATTTCTGGGAGAAGCTGTTGGAGCGCTACCTGAAGCCCATTCAGGATGATAAAGCTCATCTGGAGGAGGTGACGCGGGAGCTCAAGTCTCTGAGGAACAAAGCCGTGTTTCTGTACTTCATCATTAACGTCCTCTGGGTCGTAGCCACGTTCTTCCTGCAGGCCATCGGCGGAGACGTTCTGAGTATAGAAATCCCCAAATATTACCCCAATAAAACCCTGGCCCCGGAGCCCCTGAGGGTGGAGCCGCTCAGCCTGATGTTCCTGCTGTCCTTCGCCGTCCTGCTGGTCGTGCAGTTCCTGGCTATGCTGTACCACAGGGTCTACACGCTCATCCATGTGGTGTCGTACAGAAGCTCAGAGAAGAACTATAAAGAGAAGGATGAGGAGGATGAGGAAGATGCGCTGATCTTGGGGAACATCATCCCCAGCAGTCTGGTGATCACCGGAGACGACCTGTTGAACGGAGACTCCTTCATTCCGAGTTAACGGAGCGCAGGGGGAAATGAACTGAAGAGTGAGTCAGGCCGATGGACAGCACACGCCTGACGCTGGAGCTGGAGTTTGAGCTTGTTTACTGTACATATTTGCACTGAATGAGTCACGTTTATATCTCTACTTTAAACTGTGTTTTACTTTTGATCAAATGTCTTCATATTTTAGTTTGTCATAATAAATATTCCTGAACAAA
>TCONS_00012316
TGAGATttaagtgcagtgtgtgtgtgtgagagctcaTACCGCAGTGAATGGAGGAGAGATGGAGGAGCTGAAGCAGCGGGGGCAGAAGAGGGAAGGACGACACAGGGACACATGGGACCCGTTCCAGCTGAACCCCATCGGGGCGGAGAAGGAGAAGAAGCAAGTGTGTTTCCGGATCCTGCAGAATCTGGTGGCGGTGCTGGTGGGTCTGGCGGTGCTGGTCAGCGGCGTCGTCAGCAAGGGCTCTCTGCTGGTTCTGACCACTCTGGCTGGTCCGAAGTCTCTGAGAGATGAAGTGGAGCAGCAGTTCTACGGGCTGCTGCTGATGTGTGTTCTGGTGACCCCAAACCTCCTGATGTTCCTCAAGGCCTTGTGGAAGTGTGTCTTCAAGAGTTACGTGGCTCCAAACCCGAGAACACTGGGAATCGTGTGTGGGATTGAGGCTCTGGTGGCGCTCGGGACCGCAATGCTGGTGCTCATTGTGATGCCAAACCTTGACATCCTCACAAACCTGTGCATCCCGGGCGGGATCTGCATCTTTTCAGCCGTGCTCCAGATCGCCTTCCGCCTGCAGACACGCAGATGGATGATCCTCTACCCCATCTGCTCCCTCATTCTAGTGGTCAGCGGATACTTTCTGCTTGGCATCGACTACTACGTGAGAGAGAAAACTTATATCAAACATTTCTCTGATCGCCTTGAGAATGTGGATGATTATATGACCTACGTGTATGTCGGCATTGCTATATTTGCGTCTCTGCTGGTTTCCCTGAACTGGTGGGAGAACCCTTTTCAGGCCAGCACCAACATCCAGGAGATGCTCAGTGAGCTGGACACATTTAGAGACACTGCTTATGTGTTCACCAGCTTCATCCGTATAGTCGTGACTCTGGCCGTGTACTTCCTGTATTTCTTTGTTATTGCAAATAATCAATTCGAATGGGACGCTTACACCAAAGCCAGCCAAGCCACGCAGGAGATCGCCCTGGGCCTGTTTTTCCTGCAGGCCTTCTGCTCGGCTGCGTGCCACTGGTTTGGAGTCGTGGCCTGTAAGATCCACGCAATGAAATTCGGCTTTGCTCTGCCGGTGTCATTGATCGGTCCAGCAACTCTGATTCTGGGCATGATCCTGTTCGTGACTCAGTCTGCACAGTTCAACCCTTCACCTGAAATCGCCGCCATAATCAAAGGAAACATCACCAATGACTTCTGGCCATTTTGCTACGAACTTAAATCTCTCAGCGATGTCAACACCACGCCGGTTGTGATGCTGGAGATCTCCTACAGCATCTGCAAGACTTCGCTCAATAATCCGTACGAGATGTGGCCGTTCTCGATGCTGGCGCTGGAGGGGGTGTGCATGTGGCTGGCGCTCGTCTCCTGCACGTATTACATCTGGAAAATCAAGGTGCAGAGGATCGAGCGCACATCGCTGCTGTTCGTACGCCGCCTGTACGAGTCCGCCTTCATTGACATCTCAATGCTACTCAACACCAAAATGAAGGTCATTCGCACGGCGAACCGGGAGAGTAATAACGATGCTGAACTGGAAAACTGTGTCATTTACCTTTGTGCAACGATGTGGCATGAAACTTATGATGAGATGCTGAAAATCTTGACTTCAATGTTCAGATTGGACAGATATCGAGGGGATCCAAAGGAGGAACACAAGGATTGCTTTGACTTTGAGTGCCATATCTACGTTGACGACGCCTTCATGATAGAAAAGGACTCTGGGACAAAGTTTGTCAACACCTATGTTGAAGACCTCATACATGTTGTGATGGAGGTGTACAGGGTGTTCACCAATAAGGAGCCCGATGAGGTGTCTATCATTGAGACGCCATACGGAGGTCGACTTGTGTTCGTCATGCCCGAGGGAAACATGCTTTACGTCCACCTGAAAGACAAACAGCTGATTCGAAACAAGAAGAGATGGTCACAGATCATGTACCTGTATTACCTGCTCGGCTGGAAAGGATACAACGTCAAAAACCCTCAGAAAATAACCAGACAAAACAATCCCTGCCGTGCCAGTCTTGTTTCGCTGGATAGTGAGACGTATTTACTGCCCGGTCTGGATAATGACAGTAAAAGGAGGCATATATCTGACGACAACACATACATCATGGCTCTGGACGGAGACACAGACTTCCACCCGAAGGCTCTGATTCTGCTGGTGGACCGATTGAGGATGTACGACAACGTGGGCGCAGCTTGCGGACGCATTCATCCAACTGGAATGGGACCGATGGTGTGGTATCAGAAGTTTGAGTATGCGGTGGGCCACTGGCTCCAGAAAACAGCAGAGCACGTGTTCGGTTCGGTTCTCTGCAGTCCCGGATGCTTCAGTCTGTTCAGAGGATCTGCACTGATGGACGACAACGTACTGAAGAGATACACAACTAAAGCTACTCGCGCATCTGAGTATGTGCAGTACGATCAAGgggagGACCGCTGGCTGTGCACTCTCCTCCTGCAGCAGGGCTGGCGGGTGGAGTATAACGCCGCCTCGGACGCCTACACCAACTCTCCGCAGGAGTTCAAGGAGTTTTACAACCAGAGGCGGCGCTGGGGTCCGTCAACCCTGGCCAACACCCTGGACCTGCTGCACAGCGGGAAGGAGACGGTCAAGAGGAACACCTCCATATCCATGCTCTACATCCTCTATCAGATCTTCACCGTGGCCTCCTCCATCCTGGGACCCGCGTCTGTCACGCTCATGATCGCAGGAGCGTTCCAGTTTGTGTTTGGCGTGTCCGGCACTCTCTCCATCATAATCGCTGTCATCCCTCCAGTGTTTTACATGCTCATCTGTTTCCTGGCCAAACCCAACCTACAAATCACCATCGCCGCCATTCTCAGCGTCATTTACGCCTTCCTGATGACGGCATCCTTCTTCGCCATCATCGGTGACATGGTGATCCAGGGCACATTCATAACCCCCACCGGCCTGTTCCTGGTGTCCGGCGCTATCCTGTACATGGTGACGGCGGTGCTCCACCCGCAGGAGTGCACGCTGATCATCTACGGCCTGATGTACTTCATCTGCATCCCCAGCGGGTATCTCCTGCTCACCATATACTCGCTGGTCAACATGCACATCGTGTCCTGGGGCACGCGGGAGTCCACCAAAGGCAAGGAGCAGAAAAAGCAGGTGGGTGTGGTGTGCAACCGAGACTGCAGGATGTGCTGCTGGGATGTCAAGATCCAGGTCACGCAGGAGACCGAGAACCTCCTCCTTCAGCAAATGCAGCAGGCCGTCAATCCCACCGCCGCCGCCGCAGCTAAAGCGGAGCCGGAAGAGCCGGCGACTCTGAGCGCAGCTCCAGAACACAGCAGTGTGGAGATCAGCAGACACGTCCAGGAGAAAAACATGGAGAACAAGAAGGACCAGAGCAAGGAGAACCTCAACAAGGACAACAAGGAGAGAGACTCAGAGTCTGAGAGAAGCAGCAGCTCCAGCAGCTCTGAGAAGAAGATGGACACGTTCAATGACGACACAGACTATGAGGACACAGACTacgatgatgatgacgacgacgaGGATTATGATTATAATACTGTGGAGCCCAAAGAAGTTGTGCCTGAGAGCGCCTGGGTGGAGCCCGTGAAGAGGGAGTTCCTGAAGAAGCTGACCTACGCCAATCTGAAGAGGAACCTTCAGGAGCAGATCCGCTACACGCTGAGGAACAAGAACCAGGAGGACCTGTGCGAGGAGCTGGTGCTGATCCTGACCGACACGCTGAACGACGAGCTGAAGGATAAAGTGGGTCCTGAAGACGTCTTGACCGAGACGCAGCTGGAGGAACTGCAGTATGCGCTCAATGAAGCGGCGCGGCGCATCGTCAAGACCAACCGCATCGAGACCGGCTCACAGCGGGTGGAGCGGCGGGTCAAACGGGGCATCGAGAGGACGCTGGTGGCGCCGCAGGTGGAGAAACTGTCAGAGGACGAGCAGGATTTCTGGGAGAAGCTGTTGGAGCGCTACCTGAAGCCCATTCAGGATGATAAAGCTCATCTGGAGGAGGTGACGCGGGAGCTCAAGTCTCTGAGGAACAAAGCCGTGTTTCTGTACTTCATCATTAACGTCCTCTGGGTCGTAGCCACGTTCTTCCTGCAGGCCATCGGCGGAGACGTTCTGAGTATAGAAATCCCCAAATATTACCCCAATAAAACCCTGGCCCCGGAGCCCCTGAGGGTGGAGCCGCTCAGCCTGATGTTCCTGCTGTCCTTCGCCGTCCTGCTGGTCGTGCAGTTCCTGGCTATGCTGTACCACAGGGTCTACACGCTCATCCATGTGGTGTCGTACAGAAGCTCAGAGAAGAACTATAAAGAGAAGGATGAGGAGGATGAGGAAGATGCGCTGATCTTGGGGAACATCATCCCCAGCAGTCTGGTGATCACCGGAGACGACCTGTTGAACGGAGACTCCTTCATTCCGAGTTAACGGAGCGCAGGGGGAAATGAACTGAAGAGTGAGTCAGGCCGATGGACAGCACACGCCTGACGCTGGAGCTGGAGTTTGAGCTTGTTTACTGTACATATTTGCACTGAATGAGTCACGTTTATATCTCTACTTTAAACTGTGTTTTACTTTTGATCAAATGTCTTCATATTTTAGTTTGTCATAATAAATATTCCTGAACAAA
>TCONS_00012317
TGAAGAAGCTGACCTACGCCAATCTGAAGAGGAACCTTCAGGAGCAGATCCGCTACACGCTGAGGAACAAGAACCAGGAGGACCTGTGCGAGGAGCTGGTGCTGATCCTGACCGACACGCTGAACGACGAGCTGAAGGATAAAGTGGGTCCTGAAGACGTCTTGACCGAGACGCAGCTGGAGGAACTGCAGTATGCGCTCAATGAAGCGGCGCGGCGCATCGTCAAGACCAACCGCATCGAGACCGGCTCACAGCGGGTGGAGCGGCGGGTCAAACGGGGCATCGAGAGGACGCTGGTGGCGCCGCAGGTGGAGAAACTGTCAGAGGTGATGATTCAGTGCAAACATCTGCTCTCACTTTCACCACAACACGAGCTCCAGTAAAGCGGAAATCAGCTGTTTAAAATAAGCAGCAGTCAGATTAGATAAGCGGAGCGTCTTATTATTCGACATGTTTAATGAACGATATTCCTCCGTCATCATCAGGACGAGCAGGATTTCTGGGAGAAGCTGTTGGAGCGCTACCTGAAGCCCATTCAGGATGATAAAGCTCATCTGGAGGAGGTGACGCGGGAGCTCAAGTCTCTGAGGAACAAAGCCGTGTTTCTGTACTTCATCATTAACGTCCTCTGGGTCGTAGCCACGTTCTTCCTGCAGGCCATCGGCGGAGACGTTCTGAGTATAGAAATCCCCAAATATTACCCCAATAAAACCCTG
>TCONS_00012318
TGTCCTGGGGCACGCGGGAGTCCACCAAAGGCAAGGAGCAGAAAAAGCAGGTGGGTGTGGTGTGCAACCGAGACTGCAGGATGTGCTGCTGGGATGTCAAGATCCAGGTCACGCAGGAGACCGAGAACCTCCTCCTTCAGCAAATGCAGCAGGCCGTCAATCCCACCGCCGCCGCCGCAGCTAAAGCGGAGCCGGAAGAGCCGGCGACTCTGAGCGCAGCTCCAGAACACAGCAGTGTGGAGATCAGCAGACACGTCCAGGAGAAAAACATGGAGAACAAGAAGGACCAGAGCAAGGAGAACCTCAACAAGGACAACAAGGAGAGAGACTCAGAGTCTGAGAGAAGCAGCTCCAGCAGCTCTGAGAAGAAGATGGACACGTTCAATGACGACACAGACTATGAGGACACAGACTacgatgatgatgacgacgacgaGGATTATGATTATAATACTGTGGAGCCCAAAGAAGTTGTGCCTGAGAGCGCCTGGGTGGAGCCCGTGAAGAGGGAGTTCCTGAAGAAGCTGACCTACGCCAATCTGAAGAGGAACCTTCAGGAGCAGATCCGCTACACGCTGAGGAACAAGAACCAGGAGGACCTGTGCGAGGAGCTGGTGCTGATCCTGACCGACACGCTGAACGACGAGCTGAAGGATAAAGTGGGTCCTGAAGACGTCTTGACCGAGACGCAGCTGGAGGAACTGCAGTATGCGC
>TCONS_00012319
CTCAATAATCCGTACGAGATGTGGCCGTTCTCGATGCTGGCGCTGGAGGGGGTGTGCATGTGGCTGGCGCTCGTCTCCTGCACGTATTACATCTGGAAAATCAAGGTGCAGAGGATCGAGCGCACATCGCTGCTGTTCGTACGCCGCCTGTACGAGTCCGCCTTCATTGACATCTCAATGCTACTCAACACCAAAATGAAGGTCATTCGCACGGCGAACCGGGAGAGTAATAACGATGCTGAACTGGAAAACTGTGTCATTTACCTTTGTGCAACGATGTGGCATGAAACTTATGATGAGATGCTGAAAATCTTGACTTCAATGTTCAGATTGGACAGATATCGAGGGGATCCAAAGGAGGAACACAAGGATTGCTTTGACTTTGAGTGCCATATCTACGTTGACGACGCCTTCATGATAGAAAAGGACTCTGGGACAAAGTTTGTCAACACCTATGTTGAAGACCTCATACATGTTGTGATGGAGGTGTACAG
>TCONS_00012320
GGACACATGGGACCCGTTCCAGCTGAACCCCATCGGGGCGGAGAAGGAGAAGAAGCAAGTGTGTTTCCGGATCCTGCAGAATCTGGTGGCGGTGCTGGTGGGTCTGGCGGTGCTGGTCAGCGGCGTCGTCAGCAAGGGCTCTCTGCTGGTTCTGACCACTCTGGCTGGTCCGAAGTCTCTGAGAGATGAAGTGGAGCAGCAGTTCTACGGGCTGCTGCTGATGTGTGTTCTGGTGACCCCAAACCTCCTGATGTTCCTCAAGGCCTTGTGGAAGTGTGTCTTCAAGAGTTACGTGGCTCCAAACCCGAGAACACTGGGAATCGTGTGTGGGATTGAGGCTCTGGTGGCGCTCGGGACCGCAATGCTGGTGCTCATTGTGATGCCAAACCTTGACATCCTCACAAACCTGTGCATCCCGGGCGGGATCTGCATCTTTTCAGCCGTGCTCCAGATCGCCTTCCGCCTGCAGACACGCAGATGGATGATC

Function

symbol description
chs1 Predicted to enable chitin synthase activity. Acts upstream of or within chitin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum. Is expressed in epidermis; intestinal epithelium; intestine lumen; and scale.

GO:

id name namespace
GO:0006031 chitin biosynthetic process biological_process
GO:0030428 cell septum cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0004100 chitin synthase activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko01003 Glycosyltransferases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-1188 Predicted to enable chitin synthase activity. Acts upstream of or within chitin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum. Is expressed in epidermis; intestinal epithelium; intestine lumen; and scale.

Ensembl:

ensembl_id ENSDARG00000068515

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012315 False 2326 mRNA 0.55 10 285874 293250
TCONS_00012316 False 4652 mRNA 0.53 19 285874 303137
TCONS_00012317 False 716 lncRNA 0.53 2 287111 287907
TCONS_00012318 False 714 mRNA 0.56 3 287710 290377
TCONS_00012319 False 494 mRNA 0.48 3 297183 298454
TCONS_00012320 True 487 mRNA 0.58 3 299166 301309

Neighbor

gene id symbol gene type direction distance location
XLOC_006321 slc30a6 coding downstream 5047 269822 ~ 280827 (-)
XLOC_006320 NA coding downstream 38521 243339 ~ 247353 (-)
XLOC_006319 rtn4b coding downstream 59481 216320 ~ 226393 (-)
XLOC_006318 NA coding downstream 93465 189989 ~ 192409 (-)
XLOC_006317 NA coding downstream 105599 179232 ~ 180275 (-)
XLOC_006323 NA coding upstream 3948 307085 ~ 317034 (-)
XLOC_006324 ddx21 coding upstream 16438 319575 ~ 330004 (-)
XLOC_006325 zgc:171534 coding upstream 27474 330611 ~ 337318 (-)
XLOC_006326 NA coding upstream 34674 337811 ~ 350108 (-)
XLOC_006327 VIT coding upstream 50038 353175 ~ 377256 (-)
XLOC_006338 rn7sk misc upstream 522767 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9961604 10264741 ~ 10264905 (-)
XLOC_006315 NA non-coding downstream 159053 125612 ~ 126821 (-)
XLOC_006314 NA non-coding downstream 165115 115909 ~ 120759 (-)
XLOC_006328 NA non-coding upstream 74410 377547 ~ 383220 (-)
XLOC_006329 NA non-coding upstream 94173 397310 ~ 421609 (-)
XLOC_006330 NA non-coding upstream 127152 430289 ~ 431596 (-)

Expression


Co-expression Network