XLOC_006321 (slc30a6)


Basic Information

Item Value
gene id XLOC_006321
gene name slc30a6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 269822 ~ 280827 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012313
ATGGTGGCGCTGGACGTGCTGGGCATCACAGACTCGGATGCTCCAGTGTACAGGCAGAAGCAGGAGGCCGACACTCTTGTGCTGgggaCGATCCACCCCTTCCGTAAAGCCCATCGCTCCGTCCTGGGGAAGCTGGCACAGGAGTTCCGCTTGGTGACCTCTGACCGGCGGtcgtGGAAGATCCTCCTGTTCGGTGTGTTGAATGTGGTCTGTACAGGCTGTCTGCTGATGTGGTGCAGCTCCACCAACAGTATGGCTCTGACCGCGTACACGTACCTCACCATCTTCGACCTCttcagTCTGATCACGTGTTTGCTGAGTCTGTGGGTGACCATGAAGAAACCCTCTCAGATCTACTCCTTTGGtttcCAGCGTTTCGAGGTGCTGGCGGTCTTCTCCTCCACTGTGCTGGTTCAGCTGGGTTCGCTCTTCATCCTGAAGGAAAGTGTTGAGCGGTTTGTGGAGCAGCCTGAGGTTCATACaaAGCAGCTTtgtgtgcgtatgtatgtgtgtgtgcatatgtgtgtgtgtgttagtgtgtgtgtgtgtttgtgtctgttcCTCTGCTTCTTCACAGCTGCAAGCACCAGTTGGCTGCAGGAACATGTGGCTGATCTGAGCCGcagGTTAAACccaaaacacagcaaacacactgCAGGagatcatcttcatcatcttcatcactaTAGCAGCGGCTCGTCATCTCACTCCCAGATCAttggtgtgtgtttttctTAACTATAATGCGATGGATACCGCGTCCGCCGTGGCCATCGCCCTCATGACCTTCGGCACCATGTACCCCATGAGTGTGTACAGCGGGAAGGTGCTGCTGCAGACCACGCCGTCTCACGTCATCGGGCAGCTGGACAAGCTCCTGCGAGAGGTGTCCACGCTGGACGGTGTTCTGGAGGTCAGGAATGAACACTTCTGGACCATCGGCTTCGGCTCTCTGgcgggCTCGGTGCATGTGCGTATCCGGAGAGATGCAGATGAGCAGATGGTGTTGGCCCATGTGTGGAACCGTCTGAGCGCTCTGGTGTCTGCGCTGACCGTGCACGTCTTCAAGGACGAGTGGTCTCGAGCATCGCTGAGCTCCGGTGTTCTGCCCAGCGCACCGCTCAGCCTGTCAGAGTATGTGACTGCCGCGGCTGTGTTTCCGGCAGCCCCGTCCCGAGCACAGGGCTCCGAGCCGACCCCCGCCACATCCACACCCGCCAAACCCAGCAGCCCGCCACCCGAGTTCTCCTTCCACACGCCGGGCAGACACGTGCAGCCGGTGGTCTTCCAGACGGCACATCCACACCGGCCCCTGTACGGCGGACTCCAGGGCCCTGGGGTGCGGCTTGGTTTGGGGCCGCGGGGGCCGACGCTGCAGGCCTACAGGACTCTGAGTGCAGCGCCACACACGTACACCAGTGGGACATACACCGGCCCGCCCAGACCCTGA
>TCONS_00012314
TGCGGAAGTGAAGATGGCGCTGGACGGCTCGTCCACGTCTGTTGTTATGGCGCACGGTAACCCGTACCAGCACACTCATGTGTCCGATTATTACAGCCGCAAGCTCAGCAACAAGCCCGATGTGGTGCCGTCCGGAGTCACCGAGAGGAAGGTGTTTCCCGCGGACAAACCGGACATGGTGGCGCTGGACGTGCTGGGCATCACAGACTCGGATGCTCCAGTGTACAGGCAGAAGCAGGAGGCCGACACTCTTGTGCTGgggaCGATCCACCCCTTCCGTAAAGCCCATCGCTCCGTCCTGGGGAAGCTGGCACAGGAGTTCCGCTTGGTGACCTCTGACCGGCGG

Function

symbol description
slc30a6 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Orthologous to human SLC30A6 (solute carrier family 30 member 6).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006829 zinc ion transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040426-1838 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Orthologous to human SLC30A6 (solute carrier family 30 member 6).

Ensembl:

ensembl_id ENSDARG00000077368

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012313 False 1450 mRNA 0.59 15 269822 280652
TCONS_00012314 True 346 mRNA 0.61 3 279342 280827

Neighbor

gene id symbol gene type direction distance location
XLOC_006320 NA coding downstream 22469 243339 ~ 247353 (-)
XLOC_006319 rtn4b coding downstream 43429 216320 ~ 226393 (-)
XLOC_006318 NA coding downstream 77413 189989 ~ 192409 (-)
XLOC_006317 NA coding downstream 89547 179232 ~ 180275 (-)
XLOC_006316 FO904997.1 coding downstream 136302 129128 ~ 133520 (-)
XLOC_006322 chs1 coding upstream 5047 285874 ~ 303137 (-)
XLOC_006323 NA coding upstream 26258 307085 ~ 317034 (-)
XLOC_006324 ddx21 coding upstream 38748 319575 ~ 330004 (-)
XLOC_006325 zgc:171534 coding upstream 49784 330611 ~ 337318 (-)
XLOC_006326 NA coding upstream 56984 337811 ~ 350108 (-)
XLOC_006338 rn7sk misc upstream 545077 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9983914 10264741 ~ 10264905 (-)
XLOC_006315 NA non-coding downstream 143001 125612 ~ 126821 (-)
XLOC_006314 NA non-coding downstream 149063 115909 ~ 120759 (-)
XLOC_006328 NA non-coding upstream 96720 377547 ~ 383220 (-)
XLOC_006329 NA non-coding upstream 116483 397310 ~ 421609 (-)
XLOC_006330 NA non-coding upstream 149462 430289 ~ 431596 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_07402067_07403893 NA coding CI01000005 null 7401811 ~ 7403893 (+)