XLOC_006314


Basic Information

Item Value
gene id XLOC_006314
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 115909 ~ 120759 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013708
CCAACGGTTATCCCTGATAAGGATGATGTCTGCTTGGTTCTTGCATTACCTAAGGGGAGACATCTGGTAGAAGAATGATATAGCTACAGAGATATATCCGCCAGATTGATCCTCGACCTGACCTTTTAAATTTTTCACTTCTAGTAAGTAGTTGGAGGTCAGGATTATCTCTTTGAATACTTTTAGTCACATTTGGGCGAGTTCTTTGGTCATCTTGAATTTATGGAACTCCTTGGATGTTGACTGGAAGTATTCTAGAGCAAATCAGCGCGGAGTGAGGAGAAGGCAATGACCAGTTCATGGCCAACTTTTACTCCTGAATCTACCTGTTGGATTCAGCTGATTTGGGCAAGGGCTCTCCTTTTCCCTGGAGATATCTGGGGTCCTGGGGAGCCTGGTCTCTGGATTAGCCAGAGTAGGCCCCGTAGAGAAACCTCTTCAGACTCTTCTCGGGTGACCTGGGCAACCTTGCGGTGTTAACAAAAGGTCACTTGGGGGAGTGGTAAGTATTCAGCCCCCCTGGGTCCACTTGGACAGCACGCAGGGAAGGTGGCCGGGGGTGAACAGGCCTTAAATGAAGCCCAGTCTTCTACTGGTGATTAGCACCTCCACACAACAGCACATTGTGCATCAACACCACCTACACCAGTCATTCAAGAACTTTTCAAAAAGTCAATTCAAACATGAGAACTACTGAAGATTTGTAACCTCAGATTTTACTAGGATTAAGGTTAAGGAGTAAGAATAGAACTTTCATAGGGACTCTTTAAAACACCAATTCTCAAATTATAACTTACAACTTTAGAGAATAACCAGATTTTCCCtctttaatatccattatttccATAGATTTAATATGAATTTATAACTCAAATTTGTTCATAAACTCCATGGgaagatttaaaatgtttattcttcTTAAACTTGTAACCCAGAACTTTTCAGAAAAAATCCTACATGCCTTCTCCAGAACATCTgtagtgtatatggatgtttcaaAAATATGATCTTCTGTAACTCCTAGAACATCTAACCCCAGAACCTCTCAGTGAAAGTAACCACACTAAACTTTTACAATCTCAATTTCATGGGAATAGTTTGACCTTCACCTATAAATATTTCAACTTTACCAGTTCCAGTTTCCTCTTCAAAAATctcaaatttaaatgaaaacatctCAAGTATCAAGAATTCCTTTTGGCAGTGAGAATCCTTTCAAATACAAAAGCGCTCACTTTAAGGCTCTCACTTAAGCAATGAAAATCAGTTTGCTtctattgtgaactttttttttttttttttctccccacatAGCGTGATTGTAGAAGTTCACAACTACACAATAGCATAGACCGTACACCTATTTCCAAAATGTATTTGTCAGACAGTACTCCATGTCATTTGCAGTGGTCTCATAATAAAGTTACCCCTTTGGGAGATATTTCTGATGACTGGTTTAAAATCTGTCCAGAACCTTAAAACTCAATATAATTTGCCCAGCAGCTGCTTTGAGGTTTATTCACAATAAATCACCTCTTTGGGCAGCTCAGTTCTCCGGGCATATGGGTTACCTTGGTAATCTCTCACTGACCTATTCACTCATTGCATAAATGAATTCTTCCTTCAGTGGAATCTCCCTTATCTGCTTCATTTTCTTGAACATTCATATAAACTTCTATTACAACTGTTTGGGCTAAGGATCTTTGAGGATGTGCATGCTTTATTTTCGCATCAGGTATGAGAGGTTTAAATCGGCTCAGTTTTCAGAGATTATTTTCggtgtttaattttcactgctgaaatgaaaaacaatgaaaaatccATCCATGCTCAACTACACAAGCCCCAAACCAAGCGAGCCAGTTTGCCTACCAACCAAAGTAAAGGGGGAAAAATAACctcaaaccaggctcagttgggcatgacaatttctcctctggccaaactttctgtacagagctgcagtctaggcaccggatgctggagaatggtggacatccattgtggagaagctgcagatgGGAGAGGTCAGCGGCTGGTGTACAGACTGACCCTTCAGGATCAATATGTAGACTCGTGGGTCACTATAGGGTCTTAAAAGAATTAATCTCATGCTCtaatacaccaggagctccctcaaatactgggcAGCTAAGGCATTGAGGGCTTTGTAGGTAAACAATAacattgtaaattaaatatttaatagtgaGTCAATGCACCGatgaaagaactggagtaatGGGATTTCTTagttctagaaagcactctagcagctgcattttgaaccagctgcagtttgttagtgaggccagcagggcaTCCGCCTAGTAACTCATTACAGTAGTCTAATCGAGAGGTaatgaaagcatgaataagcttttcTGCATCAGTTATTGATAGCTCGTCAAAGTTTGGCAACATTAAGATGAAGAAATTGAGTTTTACAGATGCTTAATCTGGCCTTACACAGGTTGCTGTCAGAAATAGCCCCCAAATTACTGACTGAAGATGAGTACTAGTTTAGGGCACACTTGTCAGCTCtacaaagctgaccaatcacagcttgCTCTATTCATTGAGGTGTGCATCATTGTCTGACTGCCACAGCAAGGGCTATGTGGCCATGCACAGGTTGTGCTGAAGCATACTTttgtgcttgatgcagaagtataaatacgcCTTTAGGAGTGCTGTTTCTGTGCTATGAGATTGTCTACATCCAGATTAAAATTTTTCATAAActttagctgcttttccactcgCTGAATCGTTCTCTAAATGGAACTGCTCAATTTTGTGCCAAACTGGGCCAGGCAGCACTAATACAGTTTTATTTTCCACTCATGCTGCAACAGCTCTTTGAAACATAACACAacccatcagtagttgcctttaaTGCAATGTAAACCGCTCCATTTGTTCAATTAAACTCAATAGCTAAAACACACTTTCAAGTTGATAAACAAAAGCAACCAAGTGAATAAACACTGCTATGCCGCTCATATTGTGGTGCTGCATATAGGTACATGTTACAGCACCTTTTTTTAGAGGTTGTATGTTGCACGCCTCTGGCTAAATTTAATTTGGAGGGGAAATGACAATGTAACGATTGAAAATGTTTGCAGGGGGAATAAATGTTTAAGATCTCTGAATATGACATAAAATTAAACTATGATGCAACTAGTGCATTTGTATTACAAtagcagaaatatattttggATGGGCCTTGTCAAAATTGAGCGGGCACTATAATGGCACTcaactttaatttttacaatCTATAAGTTGATTATATAACgtgctacattttgatggtaaaatataaccctttaaaccaggg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013708 True 3343 lncRNA 0.40 2 115909 120759

Neighbor

gene id symbol gene type direction distance location
XLOC_006313 pole2 coding downstream 29062 83010 ~ 86847 (-)
XLOC_006311 gtf2a1l coding downstream 71486 40508 ~ 44423 (-)
XLOC_006310 gtf2a1l coding downstream 76655 33878 ~ 39254 (-)
XLOC_006309 NA coding downstream 82715 32443 ~ 33194 (-)
XLOC_006315 NA coding upstream 4853 125612 ~ 126821 (-)
XLOC_006316 FO904997.1 coding upstream 8369 129128 ~ 133520 (-)
XLOC_006317 NA coding upstream 58473 179232 ~ 180275 (-)
XLOC_006318 NA coding upstream 69230 189989 ~ 192409 (-)
XLOC_006319 rtn4b coding upstream 95561 216320 ~ 226393 (-)
XLOC_006338 rn7sk misc upstream 705145 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 10143982 10264741 ~ 10264905 (-)
XLOC_006320 NA non-coding upstream 122580 243339 ~ 247353 (-)
XLOC_006323 NA non-coding upstream 186326 307085 ~ 317034 (-)

Expression


Co-expression Network