XLOC_006310 (gtf2a1l)


Basic Information

Item Value
gene id XLOC_006310
gene name gtf2a1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33878 ~ 39254 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012303
caGACACACCTGCGCTCATCAGCTGCTCATCGAGGAcctgcgcgtgtgtgtgtgtgtgtgtgtgtggagacatGCTGCCGAACGCCAACACTGTGCCGAAGCTCTACCTGTCCGTCATCGAGGATGTGCTGGAGAGCGTCAGGGAGCTGTTCCAGGATGAAGGAGTGGAGGAGCGAGTACTGGAGCACCTGAgacagctctgGGAGTCAAAGGTGGTTCAGTCTAAAGCTGTCGAGGGTTTCATAAAAGACAACAATCCGTCCAAATTTGTCCTGCAACTTCCAGCAAACTACACACAGAGCCTCCACAAACCCACAGTCGTCATTCCAGCTGCTGCAAATGTGCAGAACTTCACCTCTAAAACCAGCTGTGGGTCAGTGGCCACCTTCTCTCTGCCGCCGGGAATAACCTATCCAGTGCAGATTCCAGCCGGTGTGACACTGCAGACGGCCTCCGGACACCTCTACAAGGTCAATGTACCAGTGATGGTGACCCGCGGAGCTCAGCATGTCCTGACCCGTCCTGCTCAGGCCCCTGTCACACTCCCTCAGCTTCCGGCCCGCCTGCCTGACCCAGCTGCTCCAGCTTACCTGCCCAACTCCACGGCCCCAGCCTGTCCCCCTGACCCGGCTCCCCCGGCACTGCAGACTCCTCCAGAGCCCTCCTCAGCCTCTGCCAGCCCCGGAGAGTTCACCCTGGATGGCATTGAGTTCAGCCCACAGCCCGTAGATGCCAGCAGCCACACACCGGCCCAGCACTGCGGGTACAGCAGCTTCCCGAAGGAGAGAGACGCAGACCCTCCAGACCTGCAGAACAACACCAGTCCTGGCCAACAGCTCAGCTTCAGTCCGCTGCTGGACATCCCTCAGCTGGACGGAGCGGCCGACAGCAGCGACTCTCTGGAGGAGGAagatgaggatgaggaggagCTGGGGCTCGTGGGAGAGAAGGAGTTTCTGGGAATGATCAGTGCTAATGAGgaagaggagctggaggaggaagagGATCCGCTGAACTCTGGAGATGATGTGAGCGAACAGGACATCCCGGAGATATTTGACACGGAGAACGTCATCGTCTGCCAATATGACAAGATTCACCGTAGTAAAAACCGCTGGAAGTTTTACCTGAAGGATGGCGTGATGTGTTACGGAGGGAAGGATTATGTGTTCTCCAAGGCTGTGGGTGAGGCCGAGTGGTGAAACGGCGAAGCGATGCGCTCAGAGCTGAAACTGCTGCAGTTTTCCTTCACACAGATGCTGATTTACATTCGTCTAGGATTGTCTTTGTTTGTGATGTCATACTTATATCCTCTAATACAGCTGTAAATGGTAGTGCTTGATGAAAAATAGTGTTGAAGCAGTGtctgtttttagttttagtttgtttttcccCTCGTCCTATGATAAATCCATCAGAAGTGGACCGAGTTCTTCAGTTCATATGATTTCTTGTGTTTGGTTCATTTTGAAATTAGCGAACAATCATTCCAGTGCTGTATTGGAGCTCATCTGCTGCTTTGCTTTGACACATGAGTTTTGTGTTGTTCCTGCAGATTAAAATCAGGAAACCTGC

Function

symbol description
gtf2a1l Predicted to be involved in transcription by RNA polymerase II. Predicted to act upstream of or within endocytosis and transcription initiation from RNA polymerase II promoter. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human STON1-GTF2A1L (STON1-GTF2A1L readthrough) and GTF2A1L (general transcription factor IIA subunit 1 like).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0015031 protein transport biological_process
GO:0005672 transcription factor TFIIA complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-28 Predicted to be involved in transcription by RNA polymerase II. Predicted to act upstream of or within endocytosis and transcription initiation from RNA polymerase II promoter. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human STON1-GTF2A1L (STON1-GTF2A1L readthrough) and GTF2A1L (general transcription factor IIA subunit 1 like).

Ensembl:

ensembl_id ENSDARG00000063670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012303 True 1575 mRNA 0.53 9 33878 39254

Neighbor

gene id symbol gene type direction distance location
XLOC_006309 NA coding downstream 684 32443 ~ 33194 (-)
XLOC_006311 gtf2a1l coding upstream 1254 40508 ~ 44423 (-)
XLOC_006312 ppp1r21 coding upstream 5833 45087 ~ 214122 (-)
XLOC_006313 pole2 coding upstream 43756 83010 ~ 86847 (-)
XLOC_006314 NA coding upstream 76655 115909 ~ 120759 (-)
XLOC_006315 NA coding upstream 86358 125612 ~ 126821 (-)
XLOC_006338 rn7sk misc upstream 786650 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 10225487 10264741 ~ 10264905 (-)
XLOC_006317 NA non-coding upstream 139978 179232 ~ 180275 (-)
XLOC_006318 NA non-coding upstream 150735 189989 ~ 192409 (-)
XLOC_006320 NA non-coding upstream 204085 243339 ~ 247353 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location