XLOC_006313 (pole2)


Basic Information

Item Value
gene id XLOC_006313
gene name pole2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 83010 ~ 86847 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012306
GGTAAGTTCTACCTGGAGGACCCCAGTGGTACTGTGCAGCTCGACATCTCAAAGGCAATATCCTTTATTCCACAGTGGGCTGTACACTGAGAGCTGCTTCGTGCTAGCGGAGGGCTGGTATGAGGACTCTGTGTTCCACGTCAGTGCGTTCGGCTTCCCGCCTACAGAACCCTCGTCCTtcaccaggGCGTATTTCGGCAATGTGAACTTCTTCGGCGGGCCGTCCAGCACAGCGGTGAAAGCGTCCGCTAAACTGAAGCAGCTGGAGGAGGAGAACGAGGACGCCATGTTTGTGCTGGTGTCAGACGTGTGGCTGGACAGTGTGGAGGTGCTGGAGAAGATACACACCATGTTCTCTGGATACTCCGCTCTGCCGCCCACCTGCTTCATCTTCTGTGGGAGTTTCTCCTCGGCTCCGTATGGCAGGACTCAGCTGCGCTCGCTCAGAGGTGCTGCTAGATATTAGATTCATACtTGTGTTTTACAGCAGTCGGTTTGTGTTTGTTCCTGGTCCAGAAGACCCTGGACCCGGCGCGGTTTTACCCAGgccTCCACTGGCGGAGCACATCACAGAGGAGTTTCAGCAGCGTGTGCCGCTCTCTGTCTTCACCACCAACCCCTGCAGGATCCAGTACTGCAGTCAGGAGCTGGTGATTATTCGGGAGGATCTGGTCAATAAGATGTGCCGGAACTGTGAGCGTCTGCCGAGCAGCAGCCTGGACATCCCTACACACtttgTGAAGACCGTGCTGTCTCAGGGTCACCTGACGCCGCTGCCGCTGTACGTGTGTCCGGTGTTCTGGGCGTACGATCACACACTCCGCCTGTATCCTGTACCAGACGTCATCGTGTTTGCAGACAAATACGACCCGTTCAACATCTGCAACACCGACTGCCTGTGCATCAacccgggCTCCTTCCCGAGAAGCGGATTCTCCTTCAAGGTGTATTACCCGTCCAGCAGGACTGTGGAGGAC

Function

symbol description
pole2 Predicted to enable DNA binding activity. Predicted to be involved in DNA-dependent DNA replication and error-prone translesion synthesis. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of epsilon DNA polymerase complex. Is expressed in several structures, including eye; immature eye; intestinal bulb primordium; neural plate; and ventricular zone. Orthologous to human POLE2 (DNA polymerase epsilon 2, accessory subunit).

GO:

id name namespace
GO:0042276 error-prone translesion synthesis biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0008622 epsilon DNA polymerase complex cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03030 DNA replication
ko03410 Base excision repair
ko03420 Nucleotide excision repair
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-020419-16 Predicted to enable DNA binding activity. Predicted to be involved in DNA-dependent DNA replication and error-prone translesion synthesis. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of epsilon DNA polymerase complex. Is expressed in several structures, including eye; immature eye; intestinal bulb primordium; neural plate; and ventricular zone. Orthologous to human POLE2 (DNA polymerase epsilon 2, accessory subunit).

Ensembl:

ensembl_id ENSDARG00000100028

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012306 True 977 mRNA 0.56 10 83010 86847

Neighbor

gene id symbol gene type direction distance location
XLOC_006311 gtf2a1l coding downstream 38587 40508 ~ 44423 (-)
XLOC_006310 gtf2a1l coding downstream 43756 33878 ~ 39254 (-)
XLOC_006309 NA coding downstream 49816 32443 ~ 33194 (-)
XLOC_006314 NA coding upstream 29062 115909 ~ 120759 (-)
XLOC_006315 NA coding upstream 38765 125612 ~ 126821 (-)
XLOC_006316 FO904997.1 coding upstream 42281 129128 ~ 133520 (-)
XLOC_006317 NA coding upstream 92385 179232 ~ 180275 (-)
XLOC_006318 NA coding upstream 103142 189989 ~ 192409 (-)
XLOC_006338 rn7sk misc upstream 739057 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 10177894 10264741 ~ 10264905 (-)
XLOC_006320 NA non-coding upstream 156492 243339 ~ 247353 (-)

Expression


Co-expression Network