RNA id: TCONS_00012303


Basic Information

Item Value
RNA id TCONS_00012303
length 1575
RNA type mRNA
GC content 0.53
exon number 9
gene id XLOC_006310
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33878 ~ 39254 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caGACACACCTGCGCTCATCAGCTGCTCATCGAGGAcctgcgcgtgtgtgtgtgtgtgtgtgtgtggagacatGCTGCCGAACGCCAACACTGTGCCGAAGCTCTACCTGTCCGTCATCGAGGATGTGCTGGAGAGCGTCAGGGAGCTGTTCCAGGATGAAGGAGTGGAGGAGCGAGTACTGGAGCACCTGAgacagctctgGGAGTCAAAGGTGGTTCAGTCTAAAGCTGTCGAGGGTTTCATAAAAGACAACAATCCGTCCAAATTTGTCCTGCAACTTCCAGCAAACTACACACAGAGCCTCCACAAACCCACAGTCGTCATTCCAGCTGCTGCAAATGTGCAGAACTTCACCTCTAAAACCAGCTGTGGGTCAGTGGCCACCTTCTCTCTGCCGCCGGGAATAACCTATCCAGTGCAGATTCCAGCCGGTGTGACACTGCAGACGGCCTCCGGACACCTCTACAAGGTCAATGTACCAGTGATGGTGACCCGCGGAGCTCAGCATGTCCTGACCCGTCCTGCTCAGGCCCCTGTCACACTCCCTCAGCTTCCGGCCCGCCTGCCTGACCCAGCTGCTCCAGCTTACCTGCCCAACTCCACGGCCCCAGCCTGTCCCCCTGACCCGGCTCCCCCGGCACTGCAGACTCCTCCAGAGCCCTCCTCAGCCTCTGCCAGCCCCGGAGAGTTCACCCTGGATGGCATTGAGTTCAGCCCACAGCCCGTAGATGCCAGCAGCCACACACCGGCCCAGCACTGCGGGTACAGCAGCTTCCCGAAGGAGAGAGACGCAGACCCTCCAGACCTGCAGAACAACACCAGTCCTGGCCAACAGCTCAGCTTCAGTCCGCTGCTGGACATCCCTCAGCTGGACGGAGCGGCCGACAGCAGCGACTCTCTGGAGGAGGAagatgaggatgaggaggagCTGGGGCTCGTGGGAGAGAAGGAGTTTCTGGGAATGATCAGTGCTAATGAGgaagaggagctggaggaggaagagGATCCGCTGAACTCTGGAGATGATGTGAGCGAACAGGACATCCCGGAGATATTTGACACGGAGAACGTCATCGTCTGCCAATATGACAAGATTCACCGTAGTAAAAACCGCTGGAAGTTTTACCTGAAGGATGGCGTGATGTGTTACGGAGGGAAGGATTATGTGTTCTCCAAGGCTGTGGGTGAGGCCGAGTGGTGAAACGGCGAAGCGATGCGCTCAGAGCTGAAACTGCTGCAGTTTTCCTTCACACAGATGCTGATTTACATTCGTCTAGGATTGTCTTTGTTTGTGATGTCATACTTATATCCTCTAATACAGCTGTAAATGGTAGTGCTTGATGAAAAATAGTGTTGAAGCAGTGtctgtttttagttttagtttgtttttcccCTCGTCCTATGATAAATCCATCAGAAGTGGACCGAGTTCTTCAGTTCATATGATTTCTTGTGTTTGGTTCATTTTGAAATTAGCGAACAATCATTCCAGTGCTGTATTGGAGCTCATCTGCTGCTTTGCTTTGACACATGAGTTTTGTGTTGTTCCTGCAGATTAAAATCAGGAAACCTGC

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0015031 protein transport biological_process
GO:0005672 transcription factor TFIIA complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-28 Predicted to be involved in transcription by RNA polymerase II. Predicted to act upstream of or within endocytosis and transcription initiation from RNA polymerase II promoter. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human STON1-GTF2A1L (STON1-GTF2A1L readthrough) and GTF2A1L (general transcription factor IIA subunit 1 like).

Ensembl:

ensembl_id ENSDART00000093222

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013445 lncRNA downstream 684 32443 ~ 33194 (-) True XLOC_006309
TCONS_00013708 lncRNA upstream 76655 115909 ~ 120759 (-) True XLOC_006314
TCONS_00013446 lncRNA upstream 86358 125612 ~ 126821 (-) True XLOC_006315
TCONS_00013709 lncRNA upstream 139978 179232 ~ 180275 (-) True XLOC_006317
TCONS_00013710 lncRNA upstream 150735 189989 ~ 192409 (-) True XLOC_006318
TCONS_00013447 lncRNA upstream 204085 243339 ~ 247353 (-) True XLOC_006320
TCONS_00012304 mRNA upstream 1254 40508 ~ 44423 (-) True XLOC_006311
TCONS_00012305 mRNA upstream 5833 45087 ~ 214122 (-) True XLOC_006312
TCONS_00012306 mRNA upstream 43756 83010 ~ 86847 (-) True XLOC_006313
TCONS_00012307 mRNA upstream 89874 129128 ~ 133520 (-) True XLOC_006316
TCONS_00012308 mRNA upstream 177066 216320 ~ 226393 (-) False XLOC_006319
TCONS_00012338 other upstream 493911 533165 ~ 554033 (-) True XLOC_006335
TCONS_00012343 other upstream 786650 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012358 other upstream 1370532 1409786 ~ 1414805 (-) False XLOC_006356
TCONS_00012374 other upstream 2811885 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 2815071 2854325 ~ 2856272 (-) True XLOC_006369

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU249179 False 878 lncRNA 0.54 2 NC_035917.1 11405966 ~ 11407102 (+)