RNA id: TCONS_00012305


Basic Information

Item Value
RNA id TCONS_00012305
length 2011
RNA type mRNA
GC content 0.58
exon number 17
gene id XLOC_006312
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45087 ~ 214122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACGGACCTGCAGAGCAAATACAGCAAACTGGCGCAGGAGTACTCGAAGCTCAGAGCTCAGAATCAGGTGTTGAAGAAGGCGGTGGTGGATGAACAGAGCAGCTGCAACTCACTGAAGgatgaGCTGAAGCAGAAGGAGCAGAGCTTGCGGCGGGTGGAGCAGGAGATGGACAGCCTGAGCTTCAGGAACCAGCAGCTGATGAAGAGGGTGGAGCTGCTGCAGGAGGAGCTGCTGCTGTCAGAGAGCAAGAGCAAGAAGAGcagaAGTAAAGGAGACTCTCCATCGCAGGTCAGTCTGCAGGCCCAGAGTGTGTTTGATGAAGATCTGCATAAGAAAATCCAGGAGAACGAAAGGCTTCacatacagtggttGGAGGCGCAGGAGCAGCACCAGCAGCAGGAGGCGCAGCTGAGCTCCAGACTGCAGCAGCTGCAGGAGGAGGCGCAGGAGCACCAGGCCCAGCTGGAGGAGCTGAGCTGCAGACACGCACACACCATACACACACTGCAGGAGGACAAGGCCACGCTGGAGGTGAAGCTGCAGACTCTGGAGAGAGAAGCCAGGGACTGCCGGGTCAGAACAGAGGAGTGtcagcAGCAGTTGAGGAAGTATCAGTCTGAAGTGAGCAGTCAGCTAAAGCACAGCAGCAGTGTGATCCAGGAGAAAGTGCCCTTCAACGACACTCAGTTGAGCGACTACAACAGTCTGAATGTTCCTGCACACAACAGGAGACACCAGTTGCGAGCGCGTGAGGTTGCGGCTCAGGCGCTGGTCTTCCTCCAGAATCTGGTCTCTGCTCTGCTGAACTTTCACTCCTACAGTGAGCAGCGAGTGCAGATCTACCCGCGCGACTCCTCCATCGAGACCATCTCCGCGGTCAAccagaagttCTCCCAGTATCTGCATGAGAACGCCTCGTACCTGCGGCAGCTGGAGGAGGATTTACTGCAGCTCCATCAGAGCATCACAGAGGACGCCATCACTGCTCTgGATCTTCCCGCCGCCACACAGAAGTTTCGCACCACCAACGAGTGTCTGCTGTCGTCTCTGGCGTCGCTCACCAGCAGCAGCGGAAAGATGGCCACCTTCTTCAGCAACAGTCTGGACTTCCTGACCTCGTGTGCGGGCTACAGTCCATCAGGAGCGCTGCTGAAGCCGCTGCAGGCCGACAGCGTGATGCAGAGCAAGAGGAGAGCGGCGGCGTACATCAGCAGCGTCAGGCAGgCCAGAGCTGAATCAGTGCCGTACGGAGAAGCTTTAGCGAACCGACACATCCTGACCAGCTCCACCGAGAGCAGAGAGGGGCTCatgcagcaggtccTCCAGAGTCAGCAGAAGATCTCTCGGCTGGAGCAGGAGAAGGAGCACTGGCTGCTGGAGGCTCAGCTGGCTCAGGTGCGTCTGCAGAAGGAGAGCGCGCGCATCGCTCAGCTGGAGGCGCAGGTGTGTGTGAGCGCGCCCCAATCACAGCTGTGTGCGAGCGCTGCGGAGTCACCGGTGTGTGTGAGCGCTGCGGAGtcacaggtgtgtgtgagcgCTGCGGAAACACCAAGCGAGCCCGCGCTGGCCGACGCTCCGGAGCCGCTGCAGGACACCAGCGTGGTGAGTGTGAGAGAACACAGCGGcgatgaggatgatgaagatagTAATGATGAAGATAATAAATACGGTAATGAGAGTACTAATAGAGCAGTGATGATGAGGAACGTTATGTTATAATGAAAACTCCACAGAGCAGCAGCACATGACATGCCGCGCCGTTGCCAAGCGCCTTGCCATGGCGGAGAGATCCCGTGACACGCTGGGGGAGGAGCTAAAGCTGGCCAATCAGAACATTACACGCCTGCAGGATGAGCTCAGCACCACCAAGCGCAGCTACGAGGATCAGCTGAGTATGATGAGTGATCACCTGTGCAGCATGAACGAGACCCTGAGCCAGCAGCGGGAGACCATTGACACGCTCAAGCTCAGCGCCAAGGGAAACGCCAAGAAGAACAAGAGCCGATAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-041114-8 Predicted to be located in endosome. Predicted to be active in early endosome. Orthologous to human PPP1R21 (protein phosphatase 1 regulatory subunit 21).

Ensembl:

ensembl_id ENSDART00000169273

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013445 lncRNA downstream 11893 32443 ~ 33194 (-) True XLOC_006309
TCONS_00013447 lncRNA upstream 29217 243339 ~ 247353 (-) True XLOC_006320
TCONS_00012317 lncRNA upstream 72989 287111 ~ 287907 (-) False XLOC_006322
TCONS_00013711 lncRNA upstream 92963 307085 ~ 317020 (-) False XLOC_006323
TCONS_00013712 lncRNA upstream 92963 307085 ~ 317034 (-) True XLOC_006323
TCONS_00013713 lncRNA upstream 123689 337811 ~ 338539 (-) False XLOC_006326
TCONS_00012304 mRNA downstream 664 40508 ~ 44423 (-) True XLOC_006311
TCONS_00012303 mRNA downstream 5833 33878 ~ 39254 (-) True XLOC_006310
TCONS_00012308 mRNA upstream 2198 216320 ~ 226393 (-) False XLOC_006319
TCONS_00012311 mRNA upstream 2509 216631 ~ 226109 (-) False XLOC_006319
TCONS_00012310 mRNA upstream 2509 216631 ~ 226109 (-) False XLOC_006319
TCONS_00012309 mRNA upstream 2509 216631 ~ 226109 (-) False XLOC_006319
TCONS_00012312 mRNA upstream 3703 217825 ~ 226109 (-) True XLOC_006319
TCONS_00012338 other upstream 319043 533165 ~ 554033 (-) True XLOC_006335
TCONS_00012343 other upstream 611782 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012358 other upstream 1195664 1409786 ~ 1414805 (-) False XLOC_006356
TCONS_00012374 other upstream 2637017 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 2640203 2854325 ~ 2856272 (-) True XLOC_006369

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000395_00090745_00103416.mRNA True 2699 mRNA 0.54 21 CI01000395 90362 ~ 103416 (-)
bowfin (Amia calva) AMCG00001923 True 2727 mRNA 0.67 17 CM030143.1 19244816 ~ 19254694 (+)