RNA id: TCONS_00012338


Basic Information

Item Value
RNA id TCONS_00012338
length 470
RNA type processed_transcript
GC content 0.50
exon number 4
gene id XLOC_006335
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 516258 ~ 554033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cggacgagcgagaccaaccgtcaactagagaggcttcgTGTGGACTtctataaagacgtgtttggtCACTTCTGAACTCTGCGTAATTATCCaaacacctgaggagatttctctgatGACAGACTCGCGAACGGAAAATTAACCTACAATGCGGAACCTACAATAACGAAGAGAGGTCCAGCGGGGCGTCTTGGTCCACCATGATGAACTTATTCTGAGCAGATAATGCACCGACAGCAGCAGATGAAGAGACTCGGCTGGTTTTCACAAGGCTTTGGTCCTTTTTTCCATTGGTTTGAAGGGAGTCCTGAGAGCAGCTGTTTCTTGAGTCTCCAGGCCGGCAGGGGTCGCGCGTGTGTTCTGCAGCGGGAGATCAGCGTGTGTTGTTCAGTTCAGCACATGTAGAGCAGCAGCGACATGCAACAGAGGAAAATATAAACGTGTGCTGCTCTTCCTCCTCGTTTAAAGGT

Function

GO:

id name namespace
GO:0051973 positive regulation of telomerase activity biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:1990275 preribosome binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-2871 Predicted to enable ATP hydrolysis activity and preribosome binding activity. Predicted to be involved in positive regulation of telomerase activity and ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human NVL (nuclear VCP like).

Ensembl:

ensembl_id ENSDART00000136881

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013717 lncRNA downstream 38248 493231 ~ 494917 (-) True XLOC_006334
TCONS_00013716 lncRNA downstream 38352 489738 ~ 494813 (-) False XLOC_006334
TCONS_00013715 lncRNA downstream 87276 443374 ~ 445889 (-) True XLOC_006332
TCONS_00013714 lncRNA downstream 101569 430289 ~ 431596 (-) True XLOC_006330
TCONS_00013451 lncRNA downstream 111556 397310 ~ 421609 (-) False XLOC_006329
TCONS_00012342 lncRNA upstream 263931 817964 ~ 824538 (-) True XLOC_006337
TCONS_00013718 lncRNA upstream 321912 875945 ~ 877808 (-) True XLOC_006342
TCONS_00013719 lncRNA upstream 542451 1096484 ~ 1098530 (-) True XLOC_006345
TCONS_00013720 lncRNA upstream 566156 1120189 ~ 1125945 (-) False XLOC_006346
TCONS_00013721 lncRNA upstream 566156 1120189 ~ 1126101 (-) True XLOC_006346
TCONS_00012336 mRNA downstream 54035 458519 ~ 479130 (-) True XLOC_006333
TCONS_00012335 mRNA downstream 54036 450002 ~ 479129 (-) False XLOC_006333
TCONS_00012334 mRNA downstream 94460 432790 ~ 438705 (-) True XLOC_006331
TCONS_00012332 mRNA downstream 155909 353175 ~ 377256 (-) False XLOC_006327
TCONS_00012333 mRNA downstream 171969 353584 ~ 361196 (-) True XLOC_006327
TCONS_00012339 mRNA upstream 1288 555321 ~ 638485 (-) False XLOC_006336
TCONS_00012340 mRNA upstream 1611 555644 ~ 638485 (-) True XLOC_006336
TCONS_00012341 mRNA upstream 259546 813579 ~ 824564 (-) False XLOC_006337
TCONS_00012344 mRNA upstream 298256 852289 ~ 856525 (-) False XLOC_006339
TCONS_00012345 mRNA upstream 298260 852293 ~ 856701 (-) True XLOC_006339
TCONS_00012343 other upstream 271871 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012358 other upstream 855753 1409786 ~ 1414805 (-) False XLOC_006356
TCONS_00012374 other upstream 2297106 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 2300292 2854325 ~ 2856272 (-) True XLOC_006369
TCONS_00012376 other upstream 2303428 2857461 ~ 2859411 (-) True XLOC_006370

Expression Profile

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