XLOC_006339 (zgc:163080)


Basic Information

Item Value
gene id XLOC_006339
gene name zgc:163080
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 852289 ~ 856701 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012344
TGTGTAAAGTGCGCTGTGctgacagcagtgtgtgtgtttgtgttattgttTCTGAATTCTGCTTCTGATTGTGTGCAGTTGTGATGGCTGTGGACTGGCTGGGCTTCGCTTATGCTGCTGCTCTGGTCTTCGGAGGATTTGTGGGATATAAAAGAAAAGGCAGTGTGGTGTCGTTAATCGCCGGCCTCTTCTTTGGAACCGCGTCTGCTTATGGAGCTCTGCGAATAACACTGGATCCTCAGAATTACGGGATCTCTCTGCTCTCCGCTGGTGTTCTGGCCGCTGTAATGGGGATGAGATTCAGGAAGTCTGGAAAGTTGATGCCCGCAGGGATCATGGCAGGACTGAGCCTCCTGATGGTCATCCGGATCCTGATCTTCTAGAGCTGACGGACAGACTCACACTTTCTGCTTTCTTCCAGTGCCATCTTGTACATTCCTAATAAACCTCGTCATTTTAATGCC
>TCONS_00012345
CCGCGTCATCGTGACGTCAGTTCCTCGCTCTGAGTCTGAACTTCAGCATAGATTGCGCTTATCAATAACAGCTCATCTTCAACTTTTGTAACGCGGCGCAGTGTTCCAGCGTTCCCCGTGTAGATTACCGCAGCTCCGTGCTCTCTGTTGTGATGGCTGTGGACTGGCTGGGCTTCGCTTATGCTGCTGCTCTGGTCTTCGGAGGATTTGTGGGATATAAAAGAAAAGGCAGTGTGGTGTCGTTAATCGCCGGCCTCTTCTTTGGAACCGCGTCTGCTTATGGAGCTCTGCGAATAACACTGGATCCTCAGAATTACGGGATCTCTCTGCTCTCCGCTGGTGTTCTGGCCGCTGTAATGGGGATGAGATTCAGGAAGTCTGGAAAGTTGATGCCCGCAGGGATCATGGCAGGACTGAGCCTCCTGATGGTCATCCGGATCCTGATCTTCTAGAGCTGACGGACAGACTCACACTTTCTGCTTTCTTCCAGTGCCATCTTGTACATTCCTAATAAACCTCGTCATTTTAA

Function

symbol description
zgc:163080 Predicted to be involved in mitochondrial transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial membrane. Orthologous to human TMEM14A (transmembrane protein 14A).

GO:

id name namespace
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-137 Predicted to be involved in mitochondrial transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial membrane. Orthologous to human TMEM14A (transmembrane protein 14A).

Ensembl:

ensembl_id ENSDARG00000095157

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012344 False 464 mRNA 0.50 4 852289 856525
TCONS_00012345 True 529 mRNA 0.51 5 852293 856701

Neighbor

gene id symbol gene type direction distance location
XLOC_006337 polh coding downstream 27725 813579 ~ 824564 (-)
XLOC_006336 slit1a coding downstream 213804 555321 ~ 638485 (-)
XLOC_006335 nvl coding downstream 298256 516258 ~ 554033 (-)
XLOC_006334 NA coding downstream 357372 489738 ~ 494917 (-)
XLOC_006333 heatr5b coding downstream 373159 450002 ~ 479130 (-)
XLOC_006340 AL929536.6 coding upstream 5029 861730 ~ 865193 (-)
XLOC_006341 AL929536.5 coding upstream 9592 866293 ~ 869808 (-)
XLOC_006342 NA coding upstream 19244 875945 ~ 877808 (-)
XLOC_006343 BFSP1 coding upstream 128741 985442 ~ 992458 (-)
XLOC_006344 plek coding upstream 214004 1070705 ~ 1085973 (-)
XLOC_006338 rn7sk misc downstream 26064 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9408040 10264741 ~ 10264905 (-)
XLOC_006332 NA non-coding downstream 406400 443374 ~ 445889 (-)
XLOC_006330 NA non-coding downstream 420693 430289 ~ 431596 (-)
XLOC_006329 NA non-coding downstream 430680 397310 ~ 421609 (-)
XLOC_006328 NA non-coding downstream 469069 377547 ~ 383220 (-)
XLOC_006345 NA non-coding upstream 239783 1096484 ~ 1098530 (-)
XLOC_006346 NA non-coding upstream 263488 1120189 ~ 1126101 (-)
XLOC_006350 NA non-coding upstream 403785 1260486 ~ 1269605 (-)
XLOC_006351 NA non-coding upstream 414227 1270928 ~ 1341882 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G40190 NA unknown CI01000005 null 6480689 ~ 6483489 (-)