XLOC_006334


Basic Information

Item Value
gene id XLOC_006334
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 489738 ~ 494917 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013716
GAGATGTAAACACTGCTGTGGTCAATATTATAACTGTtgttcaatgacttgcctaatgggATATGCAGTATCTAAATTTCTTTACACTAATGATCTGATGTTTGGAATGACTTAAAATTAGGGAAATAATAAACCTCAAATGAACAACTTTACCAAGAATAAATCAAgcgtaaatataaatatatcaaaacattcttaaatcaggaAGCTTTTTTTCTAAGTTTAAacagtgttgttttcagaaataaccaaaattaagtgagatttacattaaaacaagctaaacaaCCTGCCAATGAGCTGAGCAAGGTAATATTACGTCACAATTAAAATTAACTTGATTATTTCTCAtcccccattgtcagattatttagtttgttttaatgaaaatctctcttcattttgactcaatatttctgaaaacaacactataCTGTGCACTTGTCAATAGTATGCATCTTAATTTAGGAGATGTGTAGATATTTGTCTCAAAAGCGAAACAAAACGAAGCATTTTTAGCAGCCCATGCACTGAAAAACCCCAAACACTGACTATGTTAGTAACAAGGCTTTCCACATGTTTATTGCACTGACACAGATCTATTTGCAGTAAATTATACACCTTCATACAGCGGCAGGTACAACATGGAACCGACATCTACAAGACACGATCCTCAGCGATGGACAAACCATAGAATAATGAAGAAGAAGAaacgtatgaatgaatgaatgaatgctacaCGTCTGCAACCCCGTCCAGGCACGTCTCAGATGAAGGATTTGACTCTTAACATACGGATATTTGATATTCACCATTTATATAGAACAACATCAGTTAGTAGTCGGGCATGGAACGGCTCCAGAAGCGGATCCCAGTCTTTTGTTTGGAAACTGATAATTACGGGTAAAACTTCGCCTTCGGGTTTACGCCGCTCCGTCCTCGCGGTCGATTGAGTTTCCGTTGGGTCAATCGAGAGCTGGTTGGGATGAAGGTCGGCTAAACATTAAAGACAAACGCTGCTCAAACCTTCAGAAACAGAAGAAGTCGTGCACTGCAAAACAGTGCTGCTATTAATGagagtttgtcttgtttctagagcaaatatctaaaagttcttaaatcaagaagcattttttagacaaataTGTgtctgttttcagaaataatgctTGATAGTGGAGTTTTTCAGTAAAACAAGTTGAATAATCTGCCAAATGTGATACACAATTACCCGTTtttcagattatttagcttgttttaatgtaaaactcacttaattctgtaaaaattcttaaatctagAAGCACTTTACAGAATgaacaaaatgttgttttgtttttggaaatattatttgacaatgaagtgagttttttgaagcttaaaatgtgaaaaatgtggTAAGAAATAATGTTCAAGAAACAAACTAAAGAGAAAATGTTGTCcctattttaaggaaaaactaatttaattcttaaatcaagaaagtTTTTCTAGacaacttaataaaataattgtttttggaAATAACGTGATAATTAAGAgagattttactttaaaacaggTTTAATAATCTGGCAATGTGGTAAGAAAGATTGTTATTTATTTGgagaaaaaactcacttcattcaTAAAAATCTGTCTTAAAGTCTTACATCTAGAAGTATTTTATAGAGAAGTcaaaaataattctgtttttaaaaattatacattgaaataatatattttttgtcagtggggtaagaaaaatgatgccattttaaagtgaaaatatggttatttttcatTACAGCATTGGTAgataatttaattatttcttaaatataGAAGCACTTCATAGATGAGCcaaaaatatctttgtttttagaaataagtgaaaattaggtgagttttttgCCAATGTGGTAAgagaaataatgttattttaaagtgaaatcttgattattttgcttgttttaaggaaaaaacataatgtttaatgaaaaaaaaagttataatattttaaaaactagtttattctgcttgttttaaggagaaactctctacactttgactcattatttttgaaaacaacacTATATCTTGTGCTTttctggaaaatgcttcttgagttttcagatatttggacgaGAAACGAGACACAAACTCAGTTAATAAAAGCCAGtttttctgcagtgtgtgtttagtgtgtgggATATGAGCAGATTCCTTTCTCTCGCTCTCAGTTTCGCATCTCCGCGTGACACTCGCGTCATCTTAACGTGAAAACGAATGATATAGATTTACAGCGATCGTTCAATTCAAAATGAGAATCCTGCCATTAATTATTCACCCTTGTGTCCTTACAAACCTTCATGTTAAATGAGAAATATTCTGATTTAATAATTTACCATTTCTAAATCTATTCAGTCGATCTCTGAGTCTGactgaagcacttttagcttagcttagcatagatcattgaatcagattagaccgttagcatctcgctTAAAAACGATCAGTTTGGTCTCTTGAATgcaaaagacattttgaagtatgttgaaaaccggtaaccactgacttccaaagtAAGTTTTttatgctatggaagtcaatgcattTAGGATTTCCAACATTTCAAAATATCtattttgaatataaatattCTATTTGTATTTGATAGATAAATATCTATATTCCACTgaaatccatagtagaaaaaaataaatactatgaaacctgtaaccattcatttCCAGAGTAGAAGAAACTAAcactatggaagacaatggtgACCGCTTTTccatcattattcaaaatatcttcttttgtgtccaacagaacaaataaactcaaaacaagagtgagtaaatgaaatcAGCATCAATTTTTGCATGAACAAACCCTCGTTAAAGAGATATTTCTCCAAAGAATGCTAatgtactctccctcaagtgtgtCCAAACCTTGTAGTTTCTTTCGTCTGTTGATCACAAAGTAAGACATATCGAAGAAAGAAGCTAATaaagacttttaaaaagtaaagggtgagtaaataatagcAGAACGATCATTTCTGCATGAACTAACCCTCTTTAAGGAAGCAAAACACTGcagaaatgcttttcttactcagtttttgtcttgcttctagtGCAAATGTTAGAAAATACATAAATCAAGAAGCACTTTATAGACAAGCACAAGATATGGTGTTGTTTTCAGACATAATAGGTCAAAATAAAGAGAGTTTTTCATGAAAACATGACTCTGCTCCCCTCAGTGGCCGGTTATTCTGCGTGTAAACCTGCTTATTTTGACCCTGCAACACTATATTACTggctagaaaatgcttcttgatttaagaacatCAGATATTCAGACAAGAAACAAGACGGATTCTCTCaactaagaaaagcatttgtttGTGCGCAGTGAACGTAACGTTCAGAAATAAAAACACCTCGGCATCCATCCGGGTCTACTTCTTGCTGCGCAGGCGTTTGGAGTGTCGCGGGAGCTCGGAGCAGCTGCGGCGCTTCACACACAAACTCTGGCTGGAGGCTGCAGCGGCGTCTGGATCTCCGGCGCCCACCGCTCTGTCCATCAGATCCCGCAGTTTGTGCTCCAGCTCGGCCAGCCGCGCGTTCTGCTCCCCGATGACCTGCGACTGCTCCTGCAGCTTCTGCTCCTGGTCCTGCAGCTGCTTCTGCTGCTCCAGCTGCTTCAGACGCACCTCCTGCATCTCGCGCCGCAGAGCCGTCATGGAGGCGCCGTTCACCTTCACCTGCTGCTGCAGCTTCGTCATCTCCGAGCGCGACGGCGTGTTCTTGGCCAGCAGAGACATGGTGGTCAGAGAGGTGGACGGACCGGCCActgggagagggagagagggaggttTAATAGGTAATGCATGTACCTGTGATGCAACAAGGCATGGGATGACACCCCTATAGGGGGGCATATACTGATGACGTGGAGTCGATCTGCCAATCACAACACTgatcaatcagaacacactgaagGTGGGTCTTTGGAGGAAGCAGGAAATATGatagttgttttcatgttagctgagtagcagaaTAACATTAAAGTTTAATAGCAGTCGTACCCGGAGCGGATCCAATGAGGCGTCCGGAGAGATCAGCGCCCGGAAGCCTCTTCTTCAGGATGGGGACGATCTTCTCATCGAAATACTCCATGGCCATGGAGGAGATGTCCCGCAGCTCCTGCAGCACCTCATGGGCTCTCTGAGGAGCACGCGTGGAGTTGACATACCGCAAAACACGGTAAATCTCATCGATCACCTG
>TCONS_00013717
TTCCATCAACACTGAACAGAGCGAGtcattttactttcacttttcacagtatttaatgCGGTGTTTTTCTCCTTGGCttattcttttagtttggctCGAGGAGAGAGATGTAAACACTGCTGTGGTCAATATTATAACTGTtgttcaatgacttgcctaatgggATATGCAGTATCTAAATTTCTTTACACTAATGATCTGATGTTTGGAATGACTTAAAATTAGGGAAATAATAAACCTCAAATGAACAACTTTACCAAGAATAAATCAAgcgtaaatataaatatatcaaaacattcttaaatcaggaAGCTTTTTTTCTAAGTTTAAacagtgttgttttcagaaataaccaaaattaagtgagatttacattaaaacaagctaaacaaCCTGCCAATGAGCTGAGCAAGGTAATATTACGTCACAATTAAAATTAACTTGATTATTTCTCAtcccccattgtcagattatttagtttgttttaatgaaaatctctcttcattttgactcaatatttctgaaaacaacactataCTGTGCACTTGTCAATAGTATGCATCTTAATTTAGGAGATGTGTAGATATTTGTCTCAAAAGCGAAACAAAACGAAGCATTTTTAGCAGCCCATGCACTGAAAAACCCCAAACACTGACTATGTTAGTAACAAGGCTTTCCACATGTTTATTGCACTGACACAGATCTATTTGCAGTAAATTATACACCTTCATACAGCGGCAGGTACAACATGGAACCGACATCTACAAGACACGATCCTCAGCGATGGACAAACCATAGAATAATGAAGAAGAAGAaacgtatgaatgaatgaatgaatgctacaCGTCTGCAACCCCGTCCAGGCACGTCTCAGATGAAGGATTTGACTCTTAACATACGGATATTTGATATTCACCATTTATATAGAACAACATCAGTTAGTAGTCGGGCATGGAACGGCTCCAGAAGCGGATCCCAGTCTTTTGTTTGGAAACTGATAATTACGGGTAAAACTTCGCCTTCGGGTTTACGCCGCTCCGTCCTCGCGGTCGATTGAGTTTCCGTTGGGTCAATCGAGAGCTGGTTGGGATGAAGGTCGGCTAAACATTAAAGACAAACGCTGCTCAAACCTTCAGAAACAGAAGAAGTCGTGCACTGCAAAACAGTGCTGCTATTAATGagagtttgtcttgtttctagagcaaatatctaaaagttcttaaatcaagaagcattttttagacaaataTGTgtctgttttcagaaataatgctTGATAGTGGAGTTTTTCAGTAAAACaagttTAATAATCTGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013716 False 4292 lncRNA 0.37 2 489738 494813
TCONS_00013717 True 1316 lncRNA 0.36 2 493231 494917

Neighbor

gene id symbol gene type direction distance location
XLOC_006333 heatr5b coding downstream 10608 450002 ~ 479130 (-)
XLOC_006332 NA coding downstream 43849 443374 ~ 445889 (-)
XLOC_006331 EFEMP1 coding downstream 51033 432790 ~ 438705 (-)
XLOC_006330 NA coding downstream 58142 430289 ~ 431596 (-)
XLOC_006329 NA coding downstream 68129 397310 ~ 421609 (-)
XLOC_006335 nvl coding upstream 21341 516258 ~ 554033 (-)
XLOC_006336 slit1a coding upstream 60404 555321 ~ 638485 (-)
XLOC_006337 polh coding upstream 318662 813579 ~ 824564 (-)
XLOC_006339 zgc:163080 coding upstream 357372 852289 ~ 856701 (-)
XLOC_006340 AL929536.6 coding upstream 366813 861730 ~ 865193 (-)
XLOC_006338 rn7sk misc upstream 330987 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9769824 10264741 ~ 10264905 (-)
XLOC_006328 NA non-coding downstream 106518 377547 ~ 383220 (-)
XLOC_006326 NA non-coding downstream 139630 337811 ~ 350108 (-)
XLOC_006342 NA non-coding upstream 381028 875945 ~ 877808 (-)
XLOC_006345 NA non-coding upstream 601567 1096484 ~ 1098530 (-)
XLOC_006346 NA non-coding upstream 625272 1120189 ~ 1126101 (-)
XLOC_006350 NA non-coding upstream 765569 1260486 ~ 1269605 (-)
XLOC_006351 NA non-coding upstream 776011 1270928 ~ 1341882 (-)

Expression


Co-expression Network