Fish Transcriptome and Expression Database

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model fish

XLOC_006340 (AL929536.6)

Basic Information

Item	Value
gene id	XLOC_006340
gene name	AL929536.6
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	861730 ~ 865193 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012346
atgaaagctcttgccggtgctcatacgGATGAGCTGCGCACCGGGGAGAAAGCGGTGGTCCTCTTCAGGTTCATCAAACACCCAGAGTACCTCAAGGTGGGGGCAAAGCTGCTGTTCAGAGAGGGGGTCACTAAAGGCATCGGTCAGGTGACCAAACTGCAGCCCGCCGCGCTGGACCAGCAGCACTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000117000

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00012346	True	189	mRNA	0.59	2	861730	865193

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006339	zgc:163080	coding	downstream	5029	852289 ~ 856701 (-)
XLOC_006337	polh	coding	downstream	37166	813579 ~ 824564 (-)
XLOC_006336	slit1a	coding	downstream	223245	555321 ~ 638485 (-)
XLOC_006335	nvl	coding	downstream	307697	516258 ~ 554033 (-)
XLOC_006334	NA	coding	downstream	366813	489738 ~ 494917 (-)
XLOC_006341	AL929536.5	coding	upstream	1100	866293 ~ 869808 (-)
XLOC_006342	NA	coding	upstream	10752	875945 ~ 877808 (-)
XLOC_006343	BFSP1	coding	upstream	120249	985442 ~ 992458 (-)
XLOC_006344	plek	coding	upstream	205512	1070705 ~ 1085973 (-)
XLOC_006345	NA	coding	upstream	231291	1096484 ~ 1098530 (-)
XLOC_006338	rn7sk	misc	downstream	35505	825904 ~ 826225 (-)
XLOC_006471	BX537274.2	misc	upstream	9399548	10264741 ~ 10264905 (-)
XLOC_006332	NA	non-coding	downstream	415841	443374 ~ 445889 (-)
XLOC_006330	NA	non-coding	downstream	430134	430289 ~ 431596 (-)
XLOC_006329	NA	non-coding	downstream	440121	397310 ~ 421609 (-)
XLOC_006328	NA	non-coding	downstream	478510	377547 ~ 383220 (-)
XLOC_006346	NA	non-coding	upstream	254996	1120189 ~ 1126101 (-)
XLOC_006350	NA	non-coding	upstream	395293	1260486 ~ 1269605 (-)
XLOC_006351	NA	non-coding	upstream	405735	1270928 ~ 1341882 (-)

Expression

Co-expression Network