XLOC_006327 (VIT)


Basic Information

Item Value
gene id XLOC_006327
gene name VIT
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 353175 ~ 377256 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012332
CCAGTGCAGCCAAACCAAATGGAAAGAGCAAAAAAGCAAAGCAAGTTGTTCCAGCTGTAGACTGTGACATGCGCGCAGGGAAAGTCAATCTGCCTGAGTTTATGGTCAAGTGTCCCGCAAACTGCAGAGAGACCAAAGAGAAGGTGTACGGCACCGGGGTGTTCGCCTCCATATCCAGCATCTGCAACGCTGCCATTCACAGTGGCGTGATCACCAACTCTGGAGGAAAGGTGATCGTGGCCAAAACAGCAGGACAGGCGATCTACAAGGGCAGCTTCGCCAACGGTGTGCGGTCTCTGTCTTTACCCACCTGGAGAGAGTCCTTCTCCGTCTCAGTTGGTAAACCAAAGAAAGGGGTGACCTATCCATCCACGCTGGTCTTCGTCACTTCAAGACCCTCCTCAGGTAAAACAGGAGAGTCCAAAGATCTGCCGTACACTACTGCATCGCTAGTGACAGAGGCTGCAGAGGCGGAGCCAAGCACCACTACAACCCcgcccaccaccaccaccaccactaccaCCACCCCGCCGACCACGACCACACCCACCACAACATCAGCCAAACCACGGGCCACCGTTCATAGAGTCCGCGAGGCAGGCAGCAGTCACCCGTATTTCAGCTCTCTTGCACGTGTGCAGCGTCCAGAGATGAGCGCCACCGTCCGCAGACAGCCGGCTCCGTCAGCTCCAGCCTCAGGAGCGTACAGTCGAGGTCAGCCGCCATCTGAGAGGAAGCAGCACACGCCGCAGTCTAATCCCGTGTTTGCCAGAAGAGATTGGACGCACCCCTCGTATGCACGACCTGATTGGTTCTCTGGCAGCAGAAGGCCAACAGACAGTAGCCAGTCTGTGCCCAACACAGGCTATAAGTGGAGCCGGACGAGCAGCGGTGACCCCGCAGTGTTTGACCCAGTGCCTGATAGAACAGAGTATGAGCACTGGCCGCATAACAATCAGCAGTTCTCTCCTGAGTCTGAAGAAAACAAGCCTGTGCCTGAGACGAGCCACACACGAGAGACGCCTGCAGAGTCAAACCCATTCGAGTCAGGCTTCACTTCTCGAGTCATGGACACCACAGCCAGAGCTCCTGAAGTCCCGTCTCAAGGAGATCCAAACTGTAAAGTGGACATGGCGTTCCTCATGGACGGCAGCTGGAGCATCGGGAAACGCCGCTTCAAGATCCAGAAGGATTTCCTAGTGGAGGTTTCTCAGGCGCTCAATGTGGGCGTGGCCGGAGCCATGATGGGCATCATTCAGTACGGgGATGATCCAGTGACAGAGTTCAGTCTGAAGCAGTTCTCCAACTCTAAGGACCTGAAGCCGGCCATCAGTAAGATCGTGCAGAAGGGCGGCCCGTCACATGTGGGGAAGGCTCTGTCCTACATCAACAAGCAGTTCTTCAGTGATGCCAATGGGAACCGCGGTGGGGCGCCCAATGTGGCCGTGGTGCTTGTGGACGGCTGGCCTACGGACCGGGTGGAGGAAGCCTCGCGCCTTGCCAGAGAGTCCGGCATCAACATCTTCTTCGTCACTATTGAGGGCCCAGACGACAACGAGAAGCAGAACGTGGTGGAGAGCAACTTTGTTGACAAGGCGGTGTGCAGGACCAACGGCTTCTTCTCGCTCCCCATAGCGAGCTGGTTTGCTCTGCGTAAGGCCGTGCAGCCGCTGGTGAAGCGTGTGTGTGATACCGACCGGCTGGTGTGCAGTAAAACCTGCCTGAACGCCAACGACATCGCCTTCGTCATCGACGGCTCCAGCAGCGTCGGCACCGGAAACTTCCGCACCGTGCTGCAGTTCGTGGCTAACGTGACGCGGGAGTTCGAGATCTCAGACACGGACACCCGAGTGGGCATCGTGCAGTACACGTACGAGCAGCGGCTGGAGTTCGCTTTCGGACAGCACAACAACAAAGCCGACCTGCTGAACGCCATCAAGCGCATAAACTACTGGAGCGGAGGAACCAGCACCGGAGCCGCCATCACCTACGCCGCAGACCAGCTCTTCAGCAAGTCCAAACCCAACAAACGCAAGATCATGATCGTCATCACGGACGGACGCTCCTATGATGATGTGCGGGCCCCGGCGCTGGCCGTGCACCGTACAGGTGTGATTGCGTACTCTATCGGTATCGCCTGGGCTGCGCAGGACGAGCTGGAGTACATCGCCACTGACCCCGACAGGGAGCACTCCTTCTTCGTGGACGAGTTTGACAACCTCTACAAGTACGTTTCTAAAATCATCCACAACATCTGCAATGAGTTCAACTCACAGCCCCGAAACTGAGGCAGCAGACCCCCGTCAGCACACAGACAGAGGCAGAGACCCCCATGAAGACCTCGGAAGAGGAAGAACTTTCCACAGAGGTTATTTTACAACTTAAAGAAGACCCACACGAACAAATACATCAGTGTCTTATAGTAAATACTGTCTTTAAACCATACCTTATCGAAGaactcaattactgtagctgttgtgttaccatgacAATTATAGTCATTTAtgtattgtggtgattctacagttgctatggtaacacaacaactacagtaattgatctgttgtggtaattctacagttgctatggtaacacaactactatagtaattgatgtgttgtgttgattctatagttgccatggtaatgcAACAACTAAAGTAGttgatgtgttgtggtgattctgtagttgctatgg
>TCONS_00012333
ATGGACACCACAGCCAGAGCTCCTGAAGTCCCGTCTCAAGGAGATCCAAACTGTAAAGTGGACATGGCGTTCCTCATGGACGGCAGCTGGAGCATCGGGAAACGCCGCTTCAAGATCCAGAAGGATTTCCTAGTGGAGGTTTCTCAGGCGCTCAATGTGGGCGTGGCCGGAGCCATGATGGGCATCATTCAGTACGGgGATGATCCAGTGACAGAGTTCAGTCTGAAGCAGTTCTCCAACTCTAAGGACCTGAAGCCGGCCATCAGTAAGATCGTGCAGAAGGGCGGCCCGTCACATGTGGGGAAGGCTCTGTCCTACATCAACAAGCAGTTCTTCAGTGATGCCAATGGGAACCGCGGTGGGGCGCCCAATGTGGCCGTGGTGCTTGTGGACGGCTGGCCTACGGACCGGGTGGAGGAAGCCTCGCGCCTTGCCAGAGAGTCCGGCATCAACATCTTCTTCGTCACTATTGAGGGCCCAGACGACAACGAGAAGCAGAACGTGGTGGAGAGCAACTTTGTTGACAAGGCGGTGTGCAGGACCAACGGCTTCTTCTCGCTCCCCATAGCGAGCTGGTTTGCTCTGCGTAAGGCCGTGCAGCCGCTGGTGAAGCGTGTGTGTGATACCGACCGGCTGGTGTGCAGTAAAACCTGCCTGAACGCCAACGACATCGCCTTCGTCATCGACGGCTCCAGCAGCGTCGGCACCGGAAACTTCCGCACCGTGCTGCAGTTCGTGGCTAACGTGACGCGGGAGTTCGAGATCTCAGACACGGACACCCGAGTGGGCATCGTGCAGTACACGTACGAGCAGCGGCTGGAGTTCGCTTTCGGACAGCACAACAACAAAGCCGACCTGCTGAACGCCATCAAGCGCATAAACTACTGGAGCGGAGGAACCAGCACCGGAGCCGCCATCACCTACGCCGCAGACCAGCTCTTCAGCAAGTCCAAACCCAACAAACGCAAGATCATGATCGTCATCACGGACGGACGCTCCTATGATGATGTGCGGGCCCCGGCGCTGGCCGTGCACCGTACAGGTGTGATTGCGTACTCTATCGGTATCGCCTGGGCTGCGCAGGACGAGCTGGAGTACATCGCCACTGACCCCGACAGGGAGCACTCCTTCTTCGTGGACGAGTTTGACAACCTCTACAAGTACGTTTCTAAAATCATCCACAACATCTGCAATGAGTTCAACTCACAGCCCCGAAACTGA

Function

symbol description
vit Acts upstream of or within visual perception. Predicted to be active in collagen-containing extracellular matrix.

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0007601 visual perception biological_process
GO:0010811 positive regulation of cell-substrate adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko02000 Transporters
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050208-114 Acts upstream of or within visual perception. Predicted to be active in collagen-containing extracellular matrix.

Ensembl:

ensembl_id ENSDARG00000063631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012332 False 2697 mRNA 0.54 19 353175 377256
TCONS_00012333 True 1221 mRNA 0.58 6 353584 361196

Neighbor

gene id symbol gene type direction distance location
XLOC_006326 NA coding downstream 3067 337811 ~ 350108 (-)
XLOC_006325 zgc:171534 coding downstream 15857 330611 ~ 337318 (-)
XLOC_006324 ddx21 coding downstream 23171 319575 ~ 330004 (-)
XLOC_006323 NA coding downstream 36141 307085 ~ 317034 (-)
XLOC_006322 chs1 coding downstream 50038 285874 ~ 303137 (-)
XLOC_006328 NA coding upstream 291 377547 ~ 383220 (-)
XLOC_006329 NA coding upstream 20054 397310 ~ 421609 (-)
XLOC_006330 NA coding upstream 53033 430289 ~ 431596 (-)
XLOC_006331 EFEMP1 coding upstream 55534 432790 ~ 438705 (-)
XLOC_006332 NA coding upstream 66118 443374 ~ 445889 (-)
XLOC_006338 rn7sk misc upstream 448648 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 9887485 10264741 ~ 10264905 (-)
XLOC_006320 NA non-coding downstream 105822 243339 ~ 247353 (-)
XLOC_006318 NA non-coding downstream 160766 189989 ~ 192409 (-)
XLOC_006317 NA non-coding downstream 172900 179232 ~ 180275 (-)
XLOC_006334 NA non-coding upstream 112482 489738 ~ 494917 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001601 NA coding CM030143.1 CM030143.1 8634419 ~ 8651786 (-)