RNA id: TCONS_00012358


Basic Information

Item Value
RNA id TCONS_00012358
length 551
RNA type nonsense_mediated_decay
GC content 0.44
exon number 5
gene id XLOC_006356
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 1409786 ~ 1427240 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCTCCAGTGTGATGAACGCAGAGGAGAAACGAGCCTCTAGTGTGATGAACGCAGAGGAGAAACGAGCCTCTAGTGTGATCAACGCAGAGGAGATCTTCCCTCAGAGTAACGttgaagAGGCTGAAGATGTAAATAATGCCATTGCCTCAGGTGTTCTCGATGTTAAAAAAGAGACCACCGTTTCACAAGACGATGGTGAAGGAGATGACGCTAAATTTGACGAGGACATGAAGCAGGCTGTGGCCTTGAGTCTGAAGGAGGCCAGGAAAACTGCAGATCTGAGAACGGTGTAGAGGCTGTACTGAGAGTTTCTGTGAGCGTCTCACTTCATGCATGAGtcaatctgagctttattttgctAGTTTGTGTAGCAGAAAGAAGATTAGTGGTGTTGAATTGGAAGAAGCCCTGAGAAGAAGCTTGGAGGAATTCTGACAACATTATGATTTAGATTCAAGgtgttttgtttgttcgtttagtCCGTGCACTGTATTCACgaaacattttatttgttgttcttcaaAGTTAAATAAAGCAGAGTAACTCAGA

Function

GO:

id name namespace
GO:0060633 negative regulation of transcription initiation from RNA polymerase II promoter biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016925 protein sumoylation biological_process
GO:0005634 nucleus cellular_component
GO:0061665 SUMO ligase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-081107-14 Predicted to enable SUMO ligase activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription initiation from RNA polymerase II promoter; positive regulation of transcription by RNA polymerase II; and protein sumoylation. Predicted to be active in nucleus. Orthologous to human ZNF451 (zinc finger protein 451).

Ensembl:

ensembl_id ENSDART00000135523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013726 lncRNA downstream 8194 1394938 ~ 1401592 (-) True XLOC_006354
TCONS_00013725 lncRNA downstream 67904 1316317 ~ 1341882 (-) True XLOC_006351
TCONS_00013724 lncRNA downstream 69042 1270928 ~ 1340744 (-) False XLOC_006351
TCONS_00012355 lncRNA downstream 101766 1305351 ~ 1308020 (-) True XLOC_006352
TCONS_00013452 lncRNA downstream 104065 1305351 ~ 1305721 (-) False XLOC_006352
TCONS_00013728 lncRNA upstream 402285 1817090 ~ 1823921 (-) False XLOC_006357
TCONS_00013727 lncRNA upstream 402285 1817090 ~ 1823921 (-) False XLOC_006357
TCONS_00013729 lncRNA upstream 402285 1817090 ~ 1823981 (-) True XLOC_006357
TCONS_00013453 lncRNA upstream 933757 2348562 ~ 2349375 (-) False XLOC_006364
TCONS_00012370 lncRNA upstream 934271 2349076 ~ 2350355 (-) True XLOC_006364
TCONS_00012357 mRNA downstream 1011 1404924 ~ 1408775 (-) True XLOC_006355
TCONS_00012356 mRNA downstream 59864 1345276 ~ 1349922 (-) True XLOC_006353
TCONS_00012353 mRNA downstream 234216 1136462 ~ 1175570 (-) True XLOC_006348
TCONS_00012354 mRNA downstream 258376 1142724 ~ 1151410 (-) True XLOC_006349
TCONS_00012351 mRNA downstream 279690 1125185 ~ 1130096 (-) False XLOC_006347
TCONS_00012361 mRNA upstream 576165 1990970 ~ 2010259 (-) False XLOC_006358
TCONS_00012362 mRNA upstream 584407 1999212 ~ 2010191 (-) True XLOC_006358
TCONS_00012363 mRNA upstream 605410 2020215 ~ 2060713 (-) True XLOC_006359
TCONS_00012364 mRNA upstream 655563 2070368 ~ 2112008 (-) False XLOC_006360
TCONS_00012365 mRNA upstream 660269 2075074 ~ 2112450 (-) True XLOC_006360
TCONS_00012343 other downstream 583561 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012338 other downstream 855753 533165 ~ 554033 (-) True XLOC_006335
TCONS_00012374 other upstream 1436334 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 1439520 2854325 ~ 2856272 (-) True XLOC_006369
TCONS_00012376 other upstream 1442656 2857461 ~ 2859411 (-) True XLOC_006370
TCONS_00012378 other upstream 1640018 3054823 ~ 3054937 (-) True XLOC_006374
TCONS_00012381 other upstream 1783633 3198438 ~ 3243258 (-) True XLOC_006376

Expression Profile

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