XLOC_006364


Basic Information

Item Value
gene id XLOC_006364
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2348562 ~ 2350355 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013453
GACAAGATGCACTACCCCTGTTCCTACACCCTTATTTGAGGTGATAGTTCGTTCCGATATACATTTAAAGGTGACAAGAAGCGCAACCCCTGTTCCTAAACCCTTGTTTAAGGTGGTAGTTCACTGAAatagacatttgaagctgacaagatGAGCTACCCCTGTTCCCAAACCCTTATTTAAGGCGGTAGTTCATTCTGACAGACATTTGAAGTTGACAATATGCGTAACCCCTGATCCTACACTCCCTATTTTAGGTGGTAGTTCCTTCGAATAGACATTTGAGGTTGACAAGATGCACTACCCCTGTTCCTACACCCTTATTTAAGGTGGTAGTTCATTCCGATGGACatttgaagctgacaagatGCGCAACCCTTGTTCC
>TCONS_00012370
gctcaaactcccACTCATTGAAAGAAGAAAGAGGCGGGAAACCACAGGAACGtttaacaactttaatcatagaGTAAACAAAACAAACGTATCCATACAGTGCTCCTCCATAGGACTTGACACTTGTTAAACACTTGCCTCGCTCTCATAACTGTCGGCCCCGCCCACATTTTGTCATCTCTaccaaatctgaccaatcacagacctTGCATTCCACATTGTAGAAATATGTAGTTGCATTTATTTGGTATGGTGAAGTGTGCACGACTAAAGTGTGTAATGAAGCTTTGCCGGATCTTTGCTACCTCTTTAGAATGTGCTAATGGTAGTCATGTTTCATCAAAAAAAATCAGGGGTAGTTTTAAATGTCTATCTGAATGAATTACAACCCTAAATAAGGATGTAGAATCCTTTAAAATGTCTATAGGGTGTACTATATGAaatttgttcattgtttattAGAGTGGTAGTTCATTCAGCTAGACCTTTGATGCTCAATGCTACCCTTGTTCCCACACCGTTATTTAAAATGGTAGTTTATTTAGTTAGACCTTTGAAGTTGACAGGATGCATTACCCCTGTTCCTAAACCCTTATTTAATGAACAACCGTCTTAAATAAGGGAAACAGGGGTAGTCCATCTTGTCAGCTTCAAAAATGTAACTGAATGAACTACCCTTGTTCCTACACTCTTATTTAAGATGGTAGTTTATTCCAAAAGACATTTGAAGCCGACAAGATGAGCTACCCCTGTTCCCACACCCTTATTTAAGGCGGTAGTTCATTCTGACAGACATTTGAAGTTGACAATATGCGTAACCCCTGATCCTACACTCCCTATTTTAGGTGGTAGTTCCTTCGAATAGACATTTGAGGTTGACAAGATGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000102712

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013453 False 385 lncRNA 0.44 2 2348562 2349375
TCONS_00012370 True 888 lncRNA 0.39 2 2349076 2350355

Neighbor

gene id symbol gene type direction distance location
XLOC_006363 eloal coding downstream 11978 2315110 ~ 2336584 (-)
XLOC_006362 lrrc1 coding downstream 65386 2254238 ~ 2283176 (-)
XLOC_006361 mlip coding downstream 133349 2150518 ~ 2215213 (-)
XLOC_006360 fam83b coding downstream 236112 2070368 ~ 2112450 (-)
XLOC_006359 hcrtr2 coding downstream 287849 2020215 ~ 2060713 (-)
XLOC_006365 fbxo9 coding upstream 76638 2426993 ~ 2440631 (-)
XLOC_006366 NA coding upstream 151728 2502083 ~ 2503176 (-)
XLOC_006367 cox20 coding upstream 165545 2515900 ~ 2520931 (-)
XLOC_006368 BX571701.2 coding upstream 500784 2851139 ~ 2853078 (-)
XLOC_006369 BX571701.1 coding upstream 503970 2854325 ~ 2856272 (-)
XLOC_006338 rn7sk misc downstream 1522337 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 7914386 10264741 ~ 10264905 (-)
XLOC_006357 NA non-coding downstream 524581 1817090 ~ 1823981 (-)
XLOC_006354 NA non-coding downstream 946970 1394938 ~ 1401592 (-)
XLOC_006351 NA non-coding downstream 1006680 1270928 ~ 1341882 (-)
XLOC_006352 NA non-coding downstream 1040542 1305351 ~ 1308020 (-)
XLOC_006350 NA non-coding downstream 1078957 1260486 ~ 1269605 (-)
XLOC_006370 BX571701.3 non-coding upstream 507106 2857461 ~ 2859411 (-)
XLOC_006371 NA non-coding upstream 548972 2899327 ~ 2908155 (-)

Expression


Co-expression Network