XLOC_006365 (fbxo9)


Basic Information

Item Value
gene id XLOC_006365
gene name fbxo9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2426993 ~ 2440631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012371
tgtcacaaacacacacaccgtgATGGCTGCCGTGTGGCGAGCTCGTAAATTTGCCCGCTGCGTCGTCCGCTTCTCTGATCGTGATCTGTAAAATATCAATTGAAAGCACGACCTTAAACGAGACACTAAAAAGAGTCCGCAGAATAAGCTGCTATGGCTGAAAGCAACCAAAATACAGATGGCGCTGTTGAAGAAGGAGAAGATGAGAATACTGGGGACTCTAATCTGCAAATGGAGCTCAGTGCTTTTCGAGCCAAGTGGATGTCCGAGCTTCAGCCCAGCTCAGGGGGACAGAGGAGCTTCTCCAGAAACGCAGAGCTGAGGAGGAGGCAGGAGACCGCTAAAGAGGAGAAGGCCCGAGAGCTGTTCCTGAAGGCTGTGGAGGAGGAACAGAATGGAGCCGTATACGAAGCCATCAAGTACTATAAGAGTGCAATGCAGCTGGTGCCGGACATCGAGTTTAAGATCAACTACAGCAGAACTCCTGATCCGGAGCGTGGAGGCAGCTACTTGGAGAGCAGTGAGAATAATCGTGAGATTGACGACCTGCTGACATACTTCCAGCATCAGCTGACTCTGGGCAACGACGCCATGAAGCTGTGTGAGCATGAGACAGAAACCTCACAGGTGCACATATCAgCTTTGCCCTTTGAGGTGCTCATGTATATCTTCCGCTGGGTGGTGTCATGTGATCTGGACCTCCGAGCCTTAGAGCAGCTCTCCTTGGTTTGCAGGGGTTTCTACATCTGTGCAAGGGACCCTGAGATTTGGCGCTCTGCCTGTTTGAGAGTTTGGGGACGGAGCTGCACTAAAATGCTGCCCTATTCATCCTGGAGGGAGATGTTTTTGGAGAGGCCGCGTGTGCGCTTTGATGGTGTTTACATCAGTAAAACCTCGTACATTCGCCAGGGGGAGGAGTCTCTGGATGGCTTCTACAGGGCTTGGCACCAGGTGGAGTACTACAGGTACCTGCGCTTCTTCCCTGACGGTCAGGTGATGATGTTGACCACACCTGAGGACCCTCTGGTCACCGTCCCACGACTGCGCAGCAAGAactccagGATGGATTCTATAATGTTTGGCCATTACCGGCTGTCCCAGGATACGGACAATCAAACCAAAGTTTATGTGGTCGTCTCCAAGAGAAAAGAAGAGAAGGTGTCCGAGTACCAGAGGAGCCGGTTCTGCAGGCGGAACCCAGTTCCAGAAGCCGAGCGCTCCTTTCATGTGGGACTGCAGCTGTCCTCCGGGGGGCGCCAGCGCTTCAACAAACTGGTCTGGATCCACCACTCCTGCCACATCACCtacagATCTACTGGAGAGACTGTTGTCACCGCATTTGATGTGGACAAAATGTACACGCCGCTGTTTTTCGCACGAGTGAAGAGTTACACAGCGTTTTCCGAGCGTCCGCTGTAGGACGAGCCAAGAGATGCATGCAGAAATAACCCTGGACACGTCACTGCCGCTCCATCCGCTTCAACACAGCCGCTTTCTCATGAATGTACCACTATCCCAcagtcttaaagagacagttcacccaaaaatactaattctgtcatcattttctcatcctCTGCTCGTTTAAAAGAAGATAATCTGAAGAatgctgggtaaaaaaaaaactgtcattgactcccatagtatttTTAGTTcctactattgatgtcaatggctgcctttccccccaacattcttcaaaatatcttcttttgtgttcaacagaagtaacatttaaaagtttaaaagaagaAACTAATGAAACCAGTTTAAAAGAAGATAATCTGAAGTATGctgtagaaaaaaaacagcagtcATTGACTCCCATTGTATTTTTAGTTCCTACAATtgatgtcaatggctgttttttgttccacaatcttcaaaatatcttctttttgtgttcaaaattGTGTgattaaatgagcattttttgagtgaactttctCTTTAAAGGCAGCTCAAATATCTGTCACTCTCTTGTTGTATAGATGAAGAgataaaatatatctatatataagaTTGTCTGTAAGACGTTTTAAGTCAACTGTGATGAATGTTCCCCATTTTTTGTGAATTTCAGTGAGGGATGATGTCTACTGACGACTGGAACACCCAAATAAAACTGCTATATtgc
>TCONS_00012372
GATCGCTgctgtcacaaacacacacaccgtgATGGCTGCCGTGTGGCGAGCTCGTAAATTTGCCCGCTGCGTCGTCCGCTTCTCTGATCGTGATCTGTAAAATATCAATTGAAAGCACGACCTTAAACGAGACACTAAAAAGAGTCCGCAGAATAAGCTGCTATGGCTGAAAGCAACCAAAATACAGATGGCGCTGTTGAAGAAGGAGAAGATGAGAATACTGGGGACTCTAATCTGCAAGATTTTCTTGGCTAAAATAAAACTTCGTAATTAAAAATTATgttcaattaaatgaaaaaaaaaagagtaagtaCGTACACAAGTTGTAATTGTTACCGTTGTAATTGTCACCGttcattatcagtgttatatttaaaaaataaattcttatCAAAGTGTTTGTATTTTTAGTCAGCtatatttttcatacaaatctaaAATGGACACATTTCAAATAGtgtttttgctgagatggccagtcaatTGGAGGAaacatgaattattttttatattacataaTGTATAGATGTAGTTTTGAGTTGTGATTACGCAATGACGTCATCACgcaaataaatatgttaataagaaCC

Function

symbol description
fbxo9 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in several structures, including alar plate midbrain region; immature eye; musculature system; optic tectum; and pronephric duct. Orthologous to human FBXO9 (F-box protein 9).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-4194 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in several structures, including alar plate midbrain region; immature eye; musculature system; optic tectum; and pronephric duct. Orthologous to human FBXO9 (F-box protein 9).

Ensembl:

ensembl_id ENSDARG00000011055

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012371 False 2137 mRNA 0.47 13 2426993 2440622
TCONS_00012372 True 590 mRNA 0.35 3 2439337 2440631

Neighbor

gene id symbol gene type direction distance location
XLOC_006364 NA coding downstream 76638 2348562 ~ 2350355 (-)
XLOC_006363 eloal coding downstream 90409 2315110 ~ 2336584 (-)
XLOC_006362 lrrc1 coding downstream 143817 2254238 ~ 2283176 (-)
XLOC_006361 mlip coding downstream 211780 2150518 ~ 2215213 (-)
XLOC_006360 fam83b coding downstream 314543 2070368 ~ 2112450 (-)
XLOC_006366 NA coding upstream 61452 2502083 ~ 2503176 (-)
XLOC_006367 cox20 coding upstream 75269 2515900 ~ 2520931 (-)
XLOC_006368 BX571701.2 coding upstream 410508 2851139 ~ 2853078 (-)
XLOC_006369 BX571701.1 coding upstream 413694 2854325 ~ 2856272 (-)
XLOC_006370 BX571701.3 coding upstream 416830 2857461 ~ 2859411 (-)
XLOC_006338 rn7sk misc downstream 1600768 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 7824110 10264741 ~ 10264905 (-)
XLOC_006357 NA non-coding downstream 603012 1817090 ~ 1823981 (-)
XLOC_006354 NA non-coding downstream 1025401 1394938 ~ 1401592 (-)
XLOC_006351 NA non-coding downstream 1085111 1270928 ~ 1341882 (-)
XLOC_006352 NA non-coding downstream 1118973 1305351 ~ 1308020 (-)
XLOC_006371 NA non-coding upstream 458696 2899327 ~ 2908155 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G222385 NA non-coding NC_053133.1 CM020930.1 26580375 ~ 26631615 (+)