RNA id: TCONS_00012304


Basic Information

Item Value
RNA id TCONS_00012304
length 2515
RNA type mRNA
GC content 0.61
exon number 5
gene id XLOC_006311
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40508 ~ 44423 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCGTCCCGTCGGGATGTTTTGGCTGATTCGCCTCCGCTCCAGTTATTTCTGCCATTTTGTGAAAATACCGTCAGCTGTGGATGAACCGTCTGCAAACAGGAGCTCTTCACTGGAGATGAGCTGGAGATGATCAGATGATGCCCAGATCTGCAGCTGATCTTCAGGAGGACTGTGCTCAGAGCAGTAAAGCCATGTGCTCCACTAATCATCCAGCGCACTGGGTGACTTTTGAGGATGAGGGCCCCGTCCCCCCGCAGTGCTCTGTCCCTCGGCCCCGGGGCCTAAAGTTGCTCCTGCCGACGGCCCAATGCTGGAGCTCTAATGGCAGCTCACAGGTGCCCACAAACACTCCGTTGGGGGCAGCTCCTCCAGGCACTTCCTCAGGCCAGGGGCCACCTGACGCCTCTGTGTCCCCCACAGCAGCTGACGTTGAGTTGGGGCTCTTCTGGGGAGACGGGGGGCAGAGACGGGACTCCTGGAGCTCCTCCTCAGACTCAGACTCTGGACTCAGCCCTCCTCGTTTCTTCATTCGCTCCAAAGACGGAGCCGAGCCGCCGCAGGACCCGCTGCAGTACTCCTACTCCTATATCTGCCACAAACTGGAGCAGCTGAGGGCCGAGGAGGGCCGTGGTGAAGGGCTGGCCCTAGGCCCCGCAGTGGCCCCCAGACCCCCATCCTCCTTTGTCCCGCAGGGGCTGTTCCTCAGCCAGAGAAGGCCTGGGTGGCCCCTGATGCTGCGGATCCCGGAGAAGAAGAACCGCATGTCTTCACGGCAGTGGGGGCCCGTGTACCTGCGGCTCCTGCCTGGGGCCCTGCTGCAGCTCTTCTACGAGGAGGGCCTGGAGAAACCCTTCAAGGAGTTTCAGTTGCAGGTGCAGTGTGCTCTCTCTGGGCCCGCTCTGGAGAGCTACGGGGAGCCGGGCAAGATCGCCACGCTGAAGGTGGAGCAGGTGTGGTACACGGAGAAGAAGCGGCGCGAGGCCCGGCAGCTGCTGAAGTTCGGCTCCACAGACTATGGGGCGCTGGAGGACCTGCGGGTGTCCCTGGAGGAGGAGCTGGTACGGTTAGGGGCCCCACTGCTCCAGCACCGGCCCCATGAGGAGCAGGAGCTCTTCCTGCAGATCTGTGACCGCGTGTGGATGCGGCAGGACAGCAGTGGCACCGTGCTGGAGAGCTCCGCCATCACACAGCTGCACTGCCTGGCCTTCCTGAACGCGCCGGCCGAGTGTTTCCTGGAGCTGGGGCTCCTGGGTCGGGCCCCTGAGGAGGAGGACCCGCTGTGGATGGAGATCTTGGAGTATCACCTGCACCGCTGCGTGCGGCAGGCTGAGTTTGCGGAGCGGCGGCTGCTGCGCTTCTGTCCTCCAGACGGCTGCCGGGTGGAGCTGCTGCGCTTCCGCACGCGGGGCCTGGCCTGTGGGGACGCTCCACTGAGGGCCCGGGGCATGCTGACGCTGCAGGGAGCCAGTGTGCAGCTGCAGGTGTTCCTCCGCCTGCAGCCCGGCTTCCCCACAGCAGGAGCGCTGCCCGTCTGCAGGAGGGTGGAGGTGCGGGTGCCGCTGCCGGGCGAGTGTGTGCTGGTGCCCGCTGGAGCGTCTCTGTTGCGCCGTCGGCCCCTTAGGGCCCGCATACACAGGAACACCTGCCTGGGCTCCGCTCTTGAGGCCGAGGCTCAGTCTGTCACACACGCGTCTGTCGGCTCCGTCAAATATGAGAACGTGCACCGAGCAGTCGTGTGGAGGATCGAGCAGCTGCCGCCCAAGAATACAGCTGTGGATGTGCCGCAGTCGTGCTCCTGCAAGCTGGAACTGGCCTCAGATCAGCAGATTCCTGCAGACTGGCAGCCGCTGATGAGGGTGGAGTGTGAGGTGGAGGAGGCGGCGGCGTCCAGCACACGAGTGCAGTCTGTGGGCATCCAGAGCGACATCCAGCCGCACAAACAGCTGAGCAGCAGAGCGCTCTACCACTGCCAGGTGGAGATGGAGAAGCAGCTGATGGAGGCCGACACACAGCAGCAGTCCAGCTGTGCCACGCAGTGATTGATCGCAGCCGTCCAGATCACCTGTGCTAATCTGCCGCTCCTCCCCCACAGCAGTGTCGTCACCTGCACACCCGTTCATTAACCACGAGAGTCACATGAAGTGTACATATGTACAGTCCAGAGTCTTCTGATATCTGTAACGGCCGCCTGGACATCTGCTGCACTGCACCCTGCTCTACAGCTCACTGACACACGGAGACACACGGGGACATGAAGAGGACACCAGCCGCTCACTGACATGATGCAGAAACACAAACTCAGCATGTCCTGAGCTGTTACTGTGTTTCTCTGAGCATCAGGCGTtcgtgtgcatgcgtgcgtgcgtgtgtatgtgtgtgtagctCACTGTGTTGTCAGGAGCTGTATTATTGCAGATGCTCAGTAATTGTACAGATTATTCCTCTGCATTTATCATTGATGATGTGAGTTACATAATGACTGTCTCAAGTCCATAATAAAGAACttagaggtg

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0015031 protein transport biological_process
GO:0005672 transcription factor TFIIA complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-28 Predicted to be involved in transcription by RNA polymerase II. Predicted to act upstream of or within endocytosis and transcription initiation from RNA polymerase II promoter. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human STON1-GTF2A1L (STON1-GTF2A1L readthrough) and GTF2A1L (general transcription factor IIA subunit 1 like).

Ensembl:

ensembl_id ENSDART00000093247

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013445 lncRNA downstream 7314 32443 ~ 33194 (-) True XLOC_006309
TCONS_00013708 lncRNA upstream 71486 115909 ~ 120759 (-) True XLOC_006314
TCONS_00013446 lncRNA upstream 81189 125612 ~ 126821 (-) True XLOC_006315
TCONS_00013709 lncRNA upstream 134809 179232 ~ 180275 (-) True XLOC_006317
TCONS_00013710 lncRNA upstream 145566 189989 ~ 192409 (-) True XLOC_006318
TCONS_00013447 lncRNA upstream 198916 243339 ~ 247353 (-) True XLOC_006320
TCONS_00012303 mRNA downstream 1254 33878 ~ 39254 (-) True XLOC_006310
TCONS_00012305 mRNA upstream 664 45087 ~ 214122 (-) True XLOC_006312
TCONS_00012306 mRNA upstream 38587 83010 ~ 86847 (-) True XLOC_006313
TCONS_00012307 mRNA upstream 84705 129128 ~ 133520 (-) True XLOC_006316
TCONS_00012308 mRNA upstream 171897 216320 ~ 226393 (-) False XLOC_006319
TCONS_00012311 mRNA upstream 172208 216631 ~ 226109 (-) False XLOC_006319
TCONS_00012338 other upstream 488742 533165 ~ 554033 (-) True XLOC_006335
TCONS_00012343 other upstream 781481 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012358 other upstream 1365363 1409786 ~ 1414805 (-) False XLOC_006356
TCONS_00012374 other upstream 2806716 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 2809902 2854325 ~ 2856272 (-) True XLOC_006369

Expression Profile

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