RNA id: TCONS_00012318


Basic Information

Item Value
RNA id TCONS_00012318
length 714
RNA type mRNA
GC content 0.56
exon number 3
gene id XLOC_006322
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 285874 ~ 303137 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCCTGGGGCACGCGGGAGTCCACCAAAGGCAAGGAGCAGAAAAAGCAGGTGGGTGTGGTGTGCAACCGAGACTGCAGGATGTGCTGCTGGGATGTCAAGATCCAGGTCACGCAGGAGACCGAGAACCTCCTCCTTCAGCAAATGCAGCAGGCCGTCAATCCCACCGCCGCCGCCGCAGCTAAAGCGGAGCCGGAAGAGCCGGCGACTCTGAGCGCAGCTCCAGAACACAGCAGTGTGGAGATCAGCAGACACGTCCAGGAGAAAAACATGGAGAACAAGAAGGACCAGAGCAAGGAGAACCTCAACAAGGACAACAAGGAGAGAGACTCAGAGTCTGAGAGAAGCAGCTCCAGCAGCTCTGAGAAGAAGATGGACACGTTCAATGACGACACAGACTATGAGGACACAGACTacgatgatgatgacgacgacgaGGATTATGATTATAATACTGTGGAGCCCAAAGAAGTTGTGCCTGAGAGCGCCTGGGTGGAGCCCGTGAAGAGGGAGTTCCTGAAGAAGCTGACCTACGCCAATCTGAAGAGGAACCTTCAGGAGCAGATCCGCTACACGCTGAGGAACAAGAACCAGGAGGACCTGTGCGAGGAGCTGGTGCTGATCCTGACCGACACGCTGAACGACGAGCTGAAGGATAAAGTGGGTCCTGAAGACGTCTTGACCGAGACGCAGCTGGAGGAACTGCAGTATGCGC

Function

GO:

id name namespace
GO:0006031 chitin biosynthetic process biological_process
GO:0030428 cell septum cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0004100 chitin synthase activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko01003 Glycosyltransferases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-1188 Predicted to enable chitin synthase activity. Acts upstream of or within chitin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum. Is expressed in epidermis; intestinal epithelium; intestine lumen; and scale.

Ensembl:

ensembl_id ENSDART00000134963

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013447 lncRNA downstream 40357 243339 ~ 247353 (-) True XLOC_006320
TCONS_00013710 lncRNA downstream 95301 189989 ~ 192409 (-) True XLOC_006318
TCONS_00013709 lncRNA downstream 107435 179232 ~ 180275 (-) True XLOC_006317
TCONS_00013446 lncRNA downstream 160889 125612 ~ 126821 (-) True XLOC_006315
TCONS_00013708 lncRNA downstream 166951 115909 ~ 120759 (-) True XLOC_006314
TCONS_00013711 lncRNA upstream 16708 307085 ~ 317020 (-) False XLOC_006323
TCONS_00013712 lncRNA upstream 16708 307085 ~ 317034 (-) True XLOC_006323
TCONS_00013713 lncRNA upstream 47434 337811 ~ 338539 (-) False XLOC_006326
TCONS_00012330 lncRNA upstream 58560 348937 ~ 349947 (-) False XLOC_006326
TCONS_00013448 lncRNA upstream 87170 377547 ~ 383220 (-) True XLOC_006328
TCONS_00012314 mRNA downstream 6883 279342 ~ 280827 (-) True XLOC_006321
TCONS_00012313 mRNA downstream 7058 269822 ~ 280652 (-) False XLOC_006321
TCONS_00012310 mRNA downstream 61601 216631 ~ 226109 (-) False XLOC_006319
TCONS_00012319 mRNA upstream 6806 297183 ~ 298454 (-) False XLOC_006322
TCONS_00012320 mRNA upstream 8789 299166 ~ 301309 (-) True XLOC_006322
TCONS_00012321 mRNA upstream 29198 319575 ~ 319996 (-) False XLOC_006324
TCONS_00012322 mRNA upstream 29199 319576 ~ 330004 (-) True XLOC_006324
TCONS_00012323 mRNA upstream 40234 330611 ~ 337318 (-) True XLOC_006325
TCONS_00012338 other upstream 242788 533165 ~ 554033 (-) True XLOC_006335
TCONS_00012343 other upstream 535527 825904 ~ 826225 (-) True XLOC_006338
TCONS_00012358 other upstream 1119409 1409786 ~ 1414805 (-) False XLOC_006356
TCONS_00012374 other upstream 2560762 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012375 other upstream 2563948 2854325 ~ 2856272 (-) True XLOC_006369

Expression Profile

//