G90232


Basic Information

Item Value
gene id G90232
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2481369 ~ 2481775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU133576
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCTAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTCCCTCCCTCACCGCTCCATGTGTGTCCCTCCCGAAGCTCCGCGCTCGGTGGAAGAGGACGATCCCCGCGGACCACCGTCGGTATAGAAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCAAGGCCCATTTGTAGGAGAAACGTAGGGAAGTCGAGCTCCAAGACTTCAAACACATCCAAATGAGGC
>TU133578
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCTAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTCCCTCCCTCACCGCTCCATGTGTGTCCCTCCCGAAGCTCCGCGCTCGGTGGAAGAGGACGATCCCCGCGGACCACCGTCGGTATAGAAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCAAGGCCCATTTGTAGGAGAAACGTAGGGAAGTCGAGCTCCAAGACTTCAAACACATCCAAATGAGGCACTGCATGTGGCAGTCTGCCTTTCTTTTGACATCTACCGCGCAAATTGCTTTTGTATATGAAATATACGGTTAAGGTCTGAGTATTGTTAATTAACTACACATTGGTTCAGGATGACTTATATGCACAAGT

Function

GO:

id name namespace
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133576 False 276 lncRNA 0.59 1 2481369 2481644
TU133578 True 407 lncRNA 0.52 1 2481369 2481775

Neighbor

gene id symbol gene type direction distance location
tmem14a zgc:163080,LOC107751370,LOC107701972,LOC107579763,LOC107597714 coding upstream 2520 2477593 ~ 2478849 (+)
LOC122356456 LOC107710218 coding upstream 30956 2446050 ~ 2450413 (+)
LOC122356459 LOC107715620,LOC107654086,LOC107727476,LOC107571253 coding upstream 48686 2428760 ~ 2432683 (+)
nrxn1b LOC107654084,LOC107582113,LOC107699145,LOC107758571,LOC107558206,LOC107738897 coding upstream 56638 2314506 ~ 2424731 (+)
LOC122356461 cox15,LOC107753717,LOC107582029,LOC108437854,LOC108260879,LOC102219127 coding upstream 256916 2217871 ~ 2224453 (+)
polh polh coding downstream 427 2482202 ~ 2488135 (+)
LOC122356205 LOC107719934,LOC107699158,LOC107597732 coding downstream 18907 2500682 ~ 2502321 (+)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107754752,LOC107702697 coding downstream 358075 2839850 ~ 2846260 (+)
LOC122356236 apmap,LOC107702698,LOC107564208,LOC107717839,LOC107559784 coding downstream 370788 2852563 ~ 2860667 (+)
LOC122357122 cul9,LOC107655624,LOC107669557 coding downstream 435117 2916892 ~ 2951762 (+)
G90220 NA non-coding upstream 43860 2437106 ~ 2437509 (+)
G90214 NA non-coding upstream 158405 2322609 ~ 2322964 (+)
LOC122356488 NA non-coding upstream 170234 2309881 ~ 2311135 (+)
LOC122356495 NA non-coding upstream 177293 2303485 ~ 2304076 (+)
G90206 NA non-coding upstream 195125 2285525 ~ 2286244 (+)
G90290 NA non-coding downstream 143163 2624938 ~ 2625283 (+)
G90292 NA non-coding downstream 147417 2629192 ~ 2629607 (+)
G90319 tuba4l,LOC107655627,LOC107559781,LOC107564211,LOC107706828,LOC107669576 non-coding downstream 375550 2857325 ~ 3204019 (+)
LOC122356240 NA non-coding downstream 384032 2865807 ~ 2881686 (+)
G90339 NA non-coding downstream 535019 3016794 ~ 3017220 (+)
G90230 NA other upstream 10988 2469945 ~ 2470381 (+)
LOC122356772 pim3,LOC107732271 other upstream 196562 2264746 ~ 2284807 (+)
cutc cutc other upstream 300540 2176009 ~ 2180829 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other upstream 315341 2153422 ~ 2166028 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 484059 1989872 ~ 1997310 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other downstream 500784 2982559 ~ 3010641 (+)
LOC122356070 dnph1 other downstream 570207 3051982 ~ 3278260 (+)
G90350 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 other downstream 692960 3174735 ~ 3285406 (+)
G90349 NA other downstream 697652 3179427 ~ 3179933 (+)
G90324 cul9,LOC107564217,LOC107669557,LOC107559769,LOC107655624,LOC107706827 other downstream 706051 3187826 ~ 3192113 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006338 rn7sk misc NC_007124.7 CM002897.2 825904 ~ 826225 (-)
rainbow trout (Oncorhynchus mykiss) G1687845 NA non-coding NC_048584.1 CM023238.2 34626718 ~ 34683245 (+)
eurasian perch (Perca fluviatilis) G195087 NA non-coding NC_053130.1 CM020927.1 19218736 ~ 19219042 (+)
striped catfish (Pangasianodon hypophthalmus) G53729 NA non-coding NC_047597.1 CM018543.1 27530576 ~ 27803450 (-)
striped catfish (Pangasianodon hypophthalmus) G38048 NA non-coding NC_047596.1 CM018542.1 34706181 ~ 34707149 (-)
bowfin (Amia calva) G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding CM030126.1 CM030126.1 8357450 ~ 8360962 (-)