G1687845


Basic Information

Item Value
gene id G1687845
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34626718 ~ 34683245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1930575
TGCCACGTGCAGTGCCTCATTTGGATGTGTCTGAAGTCTTGGAGCTTGACTTCCCTACGTTTCTCCTACAAATGGGCCTTGAGCTTGTTTGGAGGTTCTAGCAGGGAGTGCAGCTACGCGTATACCAACGATGCTCGTCCGGGAAACTCGTCCTCTTCCACCGAGCGCGGGGCTTCGGGAGGGACGCACATGGAGcggtgagggaggaaggggacACCCGCCTAGCCAGCCAGATCAGCCGAATCAACCCTAGCGATCAATGGGGTGACAGATGTCGCAGCCAGATCGCCCTCACATCCTGCGTAATCTGTTGACTAAACTAACTGTGTGGTTA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1930575 True 334 lncRNA 0.56 2 34626718 34683245

Neighbor

gene id symbol gene type direction distance location
LOC110499384 LOC106589811 coding upstream 140 34615700 ~ 34626578 (+)
elovl5 LOC100192340 coding upstream 20615 34594957 ~ 34606103 (+)
gclc gsh1 coding upstream 35398 34583316 ~ 34591320 (+)
klhl31 LOC106589810 coding upstream 52838 34569055 ~ 34573880 (+)
LOC118942064 NA coding upstream 123052 34499031 ~ 34503666 (+)
LOC110499597 NA coding downstream 1369 34684614 ~ 34685478 (+)
LOC110499391 LOC106589815 coding downstream 83524 34766769 ~ 35179392 (+)
LOC110499393 LOC106589819 coding downstream 629366 35312611 ~ 35323282 (+)
LOC110499394 LOC106589820 coding downstream 655204 35338449 ~ 35374027 (+)
LOC110499396 LOC106589821 coding downstream 698364 35381609 ~ 35384567 (+)
G1687735 NA non-coding upstream 207431 34414763 ~ 34419287 (+)
G1687732 NA non-coding upstream 214996 34411521 ~ 34411722 (+)
G1687731 NA non-coding upstream 215308 34411190 ~ 34411410 (+)
G1687730 NA non-coding upstream 215696 34410818 ~ 34411022 (+)
hmgcll1 LOC106589805 non-coding upstream 271962 34347154 ~ 34379366 (+)
G1688405 NA non-coding downstream 59586 34742831 ~ 34743036 (+)
G1688410 NA non-coding downstream 63612 34746857 ~ 34747323 (+)
G1688414 NA non-coding downstream 66759 34750004 ~ 34750436 (+)
G1688418 NA non-coding downstream 69197 34752442 ~ 34752902 (+)
G1687675 NA other upstream 300464 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 1441442 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 1965070 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5050160 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 5168797 29437357 ~ 29458499 (+)
G1689347 NA other downstream 998122 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1017975 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1198333 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 1437371 36120616 ~ 36125390 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006338 rn7sk misc NC_007124.7 CM002897.2 825904 ~ 826225 (-)
grasscarp (Ctenopharyngodon idella) G40188 NA non-coding CI01000005 null 6398299 ~ 6476877 (-)
rainbow trout (Oncorhynchus mykiss) G40421 NA non-coding NC_048565.1 CM023219.2 37900581 ~ 37900880 (-)
rainbow trout (Oncorhynchus mykiss) G116219 NA non-coding NC_048566.1 CM023220.2 15295142 ~ 15304868 (+)
eurasian perch (Perca fluviatilis) G195087 NA non-coding NC_053130.1 CM020927.1 19218736 ~ 19219042 (+)
striped catfish (Pangasianodon hypophthalmus) G53729 NA non-coding NC_047597.1 CM018543.1 27530576 ~ 27803450 (-)
bowfin (Amia calva) G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding CM030126.1 CM030126.1 8357450 ~ 8360962 (-)
bowfin (Amia calva) G88762 NA non-coding CM030130.1 CM030130.1 31988774 ~ 31989050 (-)
tiger barb (Puntius tetrazona) G90232 NA non-coding NC_056711.1 CM032080.1 2481369 ~ 2481775 (+)