XLOC_006464 (tm9sf3)


Basic Information

Item Value
gene id XLOC_006464
gene name tm9sf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9855380 ~ 9875538 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012540
AAGACAACCACTGTCATAGAACCAGGAAGAAGGAAGGTGGGATAGCCCCCAAAAAGATACCATTTCAAATCAGTCGCAGAATTTTCCCTAGAAAACCATGGGGCTCTGCAAGTGGACGTTTGAAGTGGTTGTCTTGACGGCTGTTTTTAGTTCGTTTATACCAGTTCGAGCAGATGAACACGAGCACAAGTACACAGATAAAGAAGAGGTGGTTTTATGGATGAATACAGTGGGCCCTTATCACAACCGACAGGAGACCTATAAGTACTTCTCCCTACCGTTCTGTGTGGGAACGAAAAAAACTATTAGTCATTATCATGAGACATTAGGAGAGGCGCTACAGGGGGTTGAATTGGAGTTCAGCGGTCTGGACATCAAGTTCAAAGAGGAGGTGTTGCAGACGACATACTGTGACATTGAACTAGACAAACCTAAAAGAGATGCATTTGTCTATGCCATCAAGAACCACTACTGGTACCAAATGTACATAGATGACCTTCCCATCTGGGgaaTTGTTGGTGAAGCTGATGAGAATGGAGAGGACTATTACCTTTGGACTTACAAAAAGCTGGAGATTGGACATAATGGGAACAGAATTGTGGATGTTAACCTGACCAGTGAGGGCAAGGTCAAGCTTGTTCCAAACACGAGAATTCCCATGTCATACTCTGTCAAGTGGAAGAAATCTGATGTGAAATTTGAGGATAGATTTGACAAATACCTTGATCCATCTTTCTTTCAACACAGAATTCACTGGTTCTCAATATTCAACTCATTCATGATGGTGATTTTCCTGGTGGGCCTTGTTTCAATGATCCTGATGAGAACATTAAGGAAAGACTATGCCAGATACAGCAAAGAGGAGGAAATGGATGACATGGATCGTGATCTTGGTGATGAATATGGCTGGAAGCAGGTTCACGGGGATGTGTTCAGGCCATCCAGTCACCCGCTGATCTTCTCCTCCCTCATTGGCTCTGGCTGTCAAATTTTTTCAGTTTCCCTTATAGTCATCATTTTGGCCATGATTGAGGACTTGTATACAGAGAGAGGGTCCATGTTGAGTACAGCCATATTTGTTTATGCTGCCACGTCTCCAGTCAATGGCTACTTTGGTGGAAGCCTATATGCAAAACAAGGAGggagGAGATGGATAAAGCAGATGTTCATTGGAGCCTTCCTGATTCCTGCAATGGTGTGTGGTACAGCGTTCTTCATCAACTTCATCGCCATCTACTACCATGCCTCAAGAGCAATCCCATTCGGCACTATGGTTGCGGTGTGCTGCATCTGCTTATTTGTAATTCTACCTCTGAACCTGGTGGGGACGATCCTGGGCAGAAACCTCTCCGGACAGCCCAACTTTCCTTGTAGAGTCAATGCTGTACCCAGACCCATCCCAGAAAAGAAATGGTTTATGGAGCCAGCAGTTATCGTGTGTTTAGGTGGCATCCTTCCATTCGGCTCGATATTCATTGAAATGTACTTCATTTTCACATCTTTCTGGGCCTACAAGATTTACTATGTGTATGGATTTATGATGCTGGTGCTGGTGATCCTGTGCATCGTTACTGTCTGCGTCACCATTGTCTGCACCTACTTCCTTCTCAATGCAGAAGACTACAGATGGCAGTGGACAAGCTTTCTCTCTGCAGCGTCAACAGCAGTTTATGTTTACATGTACTCCTTCTACTACTATTTCTTCAAAACAAAGATGTATGGCTTATTCCAGACGTCATTCTACTTTGGCTACATGGCTGTGTTCAGCACTGCTCTGGGAATCATGTGTGGAGCGGTGGGTTACATGGGAACAAGTGCCTTTGTGAGGAAGATCTACACAAATGTGAAAATCGACTAAAACTCTGCAGAGACGCAGCAGAAGAGCCGACACTTCCTCCCGATCGAAACGGGCACAAAGTCTCCATTTATTTTGCAAGATGAGATTGTGGTATCTTGTACAAAATCTAGTTTTCCATTTTCTCAATGAATTAAACGTTGCGGCATGATGCATACACAAGGGTAAACCGAGAGGTTAAATAaacaggacttttaattttttttccctttttttttttaatcgttgattttttttttttttttccctccagaGGAAACGCAGGCAGATAAAAGGGGAAAGAAAGTACACCACAGCATTGCTCTTATTTCTTAGAAAGTCAATCCCACCCAAAACAACCATTGAACAGATCTTTATTGATGGAATGGTCTAGCTCTCTTCAGTGAAGAGGCCAAAGCGTATTGAGAGCCTTTGTTCTATTATATGAGAATATTTTGGAGAGTGGGGTTTACGTCCATCCTCTTGCTTGTCTGTTTTGTATTACAGAGTCGCCATTGTTGTGGTATCGTTTTACGCGCTTGCAAATCACACCAAAAACACAATGTGGTTTAAAattccaaaatatttaatttcttcgttttttttttccatagatAAATTGATACGAAACGATGCGAAGCGTCCAGGTTTAGCTTTAGCGGGTGCTGTCCTGTCGCTTGGTACATCAGATACAGTTCGCTATCCACGGGAGAATTTAGTGAGACGATCTGAGATAGTTTTTATGGCTTGTGTGACGTGATGTTTCCTTTTTTCCAGTTTAGTCTTATGTTGTCGTTTGGGTTTGAATGAAGTCTGCTGGTAAAGATAATATATGGAGGGGGTGGCCATGTATATAACCTTAATAATGTAACTGTAGATGTAGATCTCAAATGTATTTTGGTTGTACAGATTTATTAAAGGgtgtcttttctttcttttatggACAGTCTAAGGTTTAaggtttgtttgttactttattTGAAGGTTGGGGTGGCACATTTGGTTACATCTTGCCTGATATTGCATGGATTATTCACCAAATTATATGATCcgattctgtttgtttgtttttaataagagTTCCACTTGGTCTTTTTTTAGGTGACCCCCATCACTACCCTTGTTCATTTGCATCTTGTAGGACGGTCTCAAAAATAAGTGCTTTGTTGACTTTGTGCTGCTCATAGAGGAGATAGTcatcagctttttttattatgatttgtttcaggttttttttttaaagagttgaAAGGCTATTCGTTGTCTTGGACGGCCGATTCTCTCATGCTTATTTTTGTATCCATGATCTGAACCAAAATTGTGAATGTCAAGACACAATTTAGGCACACATGCTAAATCTCTGCAGACATACTGTACAAAGTGAAGTTCTTGTACACTTTGCTCGATGTTTTTCATGGTTGCTAAGTGCAGACACACTTAGACCAAGCTGTTGTTCTTATTTTTCTTATGTTCCAttgtgtaaatacagtatgtaactaaaaaaaaaaacgtttgagaaGTGGCAAAGCCTTTTTCTAAACCTCATTCCTcccaatttaaaaaaacaattgattTCTGGTTCTTCATGTCATGTTCCATGTGAAGTCTGAAGAgacattttaaacacaatattaaCTTGCTGTAAaggagaaaaaagaaataaacattgtttttgaGGTTATGTAGGCATGGTTTATATATGAAGGAACAGTTGTTGTAATTAAAGCTTTCTGCTGGAGGAGAGCAGAGTCGGAGCAGAGTCATTGAATGGGAACGACAAGAATCACACACTCTCAGTATGTAAAACTGATTGCACTTTTCAATAGAATAAACTAATGGTGGGATGGCTGCTTCA

Function

symbol description
tm9sf3 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3).

GO:

id name namespace
GO:0072657 protein localization to membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2714 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3).

Ensembl:

ensembl_id ENSDARG00000028748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012540 True 3689 mRNA 0.41 15 9855380 9875538

Neighbor

gene id symbol gene type direction distance location
XLOC_006463 sfxn4 coding downstream 13574 9831010 ~ 9841806 (-)
XLOC_006462 cpxm1a coding downstream 246437 9575516 ~ 9608943 (-)
XLOC_006458 NA coding downstream 296955 9501767 ~ 9558425 (-)
XLOC_006465 si:ch211-117n7.7 coding upstream 3006 9878544 ~ 9886579 (-)
XLOC_006466 si:ch211-117n7.6 coding upstream 14138 9889676 ~ 9895628 (-)
XLOC_006467 NA coding upstream 201677 10077215 ~ 10118935 (-)
XLOC_006468 NA coding upstream 275381 10150919 ~ 10232078 (-)
XLOC_006469 NA coding upstream 374636 10250174 ~ 10253034 (-)
XLOC_006338 rn7sk misc downstream 9029155 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 389203 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 1078903 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 1199933 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 1205329 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1625215 8168713 ~ 8230165 (-)
XLOC_006472 NA non-coding upstream 399748 10275286 ~ 10346890 (-)
XLOC_006476 AL928999.1 non-coding upstream 1036948 10912486 ~ 10912602 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_09868585_09877984 TM9S3, TM9SF3 coding CI01180000 null 9868585 ~ 9878163 (+)
bowfin (Amia calva) AMCG00003142 tm9s3,tm9sf3 coding CM030139.1 CM030139.1 12823947 ~ 12848833 (-)