RNA id: TCONS_00012542


Basic Information

Item Value
RNA id TCONS_00012542
length 1310
lncRNA type retained_intron
GC content 0.41
exon number 12
gene id XLOC_006465
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9878544 ~ 9886579 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGAGGCGAAGAGTCGATAAATCTGAAAGAAAATTTCAAGCTGCAAGACATCAACAATCAAGCCCATCACCTAGGCCTAAACATGTGCATGCAAGCTCTCAGTGGTCATGGGCGAAAATAGGACTTGTATCTCTCCTCATACTTGGTGCAACAATCCCATTTCTTCTGCATGTCTTCTctgACATTGATGACCTCAGCCGACCTTCAGATTTGGGTCTTAATCATACTATAAATTTCTATCTGAAAACTGAGGAGGGTGTGAGGGTGGGCGTGTGGCATACTGTACCTGAACATAGGTGGAAGGAGGCGCAGGGTAAGAACGTAGAGTGGTATGAGAAGGCTCTAGGGGACGGATCACCAATTTTCATGTACCTTCATGGCAATACAGGCAACAGATCTGCACCTCATCGTATTGGAGTTGCAAATATCCTAAGTGCTCTTGGATATCATGCCTTGGTGATGGACTACAGAGGTTTTGGGGACTCGACTGGTGAACCCACAGAGCCTGGACTGACTACTGATGCTCTATACTTGTATAACTGGATTAAGAAGCGCAGTGGAAACAGCCTGCTGTGTGTGTGGGGTCACTCCCTTGGTAGTGGTGTAACTACTAACACTGCAGTTAAATTACTGGAGCAAGGTCAGAATGTGACAGACTTTATTTTATAATCTTGCTTATCTATGTGGCTCTTCAAagttgttgttttgctttttttatttctttaaatgtatttcttgACTGTAAGGATAAACTGCACATTTCCTGACAGGAAAAAAGTTTGACGGAATAATACTGGAGGGCGCATTCCTAAGCGGGCGAATGGCAGCTGATCAAGTCTTTGAACACCCTTTTACCTGGTATTATTGGAAGTTCCCGTATATTCAGTATTTCCTCTTCAATCCAATGAAAAACAACAATCTAGATTTTCCAACTGATAAAAATTTGGAAAAAATCAGATCTCCGATTATGATTCTCCACTCCGAAGATGACCATATAGTGCCCATGAGTGTGGCTCAGGAGATTTACAGAATTGCAAAAAAGGCTCAGAACTCAGATGAACGAGTCAAGCTGGTGCCATTTGATGGAAAGTATGGATACCTTCATAATGGGCTTTATAGAGACCCTGCTTTGCCAAATATCGTAAGggaGTTTGTGCAGTCACTAACAGCATGAGACGGTGTAAGAAGAGGATGATTTACAAGTAGTAATCAGCTACCTCAAACAGTTTTTTGTTATCGCTGGTGTTGTAACTGTAAACTTACAGTTCTTTTtaactacattaataaacattaacattttatgaAAC

Function

GO:

id name namespace
GO:0052651 monoacylglycerol catabolic process biological_process
GO:0006660 phosphatidylserine catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0004622 lysophospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-569 Predicted to enable acylglycerol lipase activity; lysophospholipase activity; and palmitoyl-(protein) hydrolase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ABHD12B (abhydrolase domain containing 12B).

Ensembl:

ensembl_id ENSDART00000134738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013753 lncRNA downstream 320121 9501767 ~ 9558425 (-) True XLOC_006458
TCONS_00013752 lncRNA downstream 510857 9356089 ~ 9367689 (-) False XLOC_006453
TCONS_00012527 lncRNA downstream 511505 9361988 ~ 9367041 (-) False XLOC_006453
TCONS_00012524 lncRNA downstream 516223 9356089 ~ 9362323 (-) False XLOC_006453
TCONS_00012516 lncRNA downstream 586861 9288840 ~ 9291685 (-) False XLOC_006449
TCONS_00013754 lncRNA upstream 190697 10077215 ~ 10080653 (-) False XLOC_006467
TCONS_00013755 lncRNA upstream 192875 10079393 ~ 10081707 (-) False XLOC_006467
TCONS_00013756 lncRNA upstream 228216 10114734 ~ 10115595 (-) True XLOC_006467
TCONS_00013757 lncRNA upstream 264401 10150919 ~ 10232018 (-) False XLOC_006468
TCONS_00013758 lncRNA upstream 264401 10150919 ~ 10232078 (-) False XLOC_006468
TCONS_00012540 mRNA downstream 3008 9855380 ~ 9875538 (-) True XLOC_006464
TCONS_00012539 mRNA downstream 36740 9831010 ~ 9841806 (-) True XLOC_006463
TCONS_00012537 mRNA downstream 269603 9575516 ~ 9608943 (-) False XLOC_006462
TCONS_00012538 mRNA downstream 280226 9581294 ~ 9598320 (-) True XLOC_006462
TCONS_00012536 mRNA downstream 332180 9543180 ~ 9546366 (-) True XLOC_006461
TCONS_00012545 mRNA upstream 3158 9889676 ~ 9895628 (-) False XLOC_006466
TCONS_00012546 mRNA upstream 3515 9890033 ~ 9895564 (-) True XLOC_006466
TCONS_00012549 mRNA upstream 371489 10258007 ~ 10261383 (-) True XLOC_006470
TCONS_00012553 mRNA upstream 473926 10360444 ~ 10620794 (-) False XLOC_006473
TCONS_00012554 mRNA upstream 473974 10360492 ~ 10431476 (-) False XLOC_006473
TCONS_00012530 other downstream 436214 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012528 other downstream 510011 9362226 ~ 9368535 (-) True XLOC_006453
TCONS_00012525 other downstream 510857 9361810 ~ 9367689 (-) False XLOC_006453
TCONS_00012519 other downstream 578305 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012477 other downstream 869305 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012547 other upstream 193509 10080027 ~ 10114880 (-) False XLOC_006467
TCONS_00012548 other upstream 211333 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012550 other upstream 378223 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012560 other upstream 1025968 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012566 other upstream 1133756 11020274 ~ 11022106 (-) False XLOC_006478

Expression Profile

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