RNA id: TCONS_00012548


Basic Information

Item Value
RNA id TCONS_00012548
length 729
RNA type processed_transcript
GC content 0.41
exon number 4
gene id XLOC_006467
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 10077215 ~ 10118935 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATAAATGGTACATTTTACCAACACAAATAAAGTTTAATTGCTAAATATACAGATGAGTAGCATAACATTTTGCATTAGTGAAGGAAGAGCCATTACCAAACTCTGCATTTCCTCTTCAGGGGCTGAAGTTGATGAGTGGTTACAACATTTGGGCAACTACCTAAGCATGATACAGAACAATCAACGTCACCATTGTGGTGAAAGTGAACTGATTGCATCCCACTCTGCCTTTCAGCTACAAAGGTGTCCTGGAGGCCCACAGATGCATCAAGTCCAAGTGCTTGAAGGAAGATCGACTCGTTTAACTCGACAACTATGAAAGCCATCCAAGGAATGATATGAGCTCTTGGAGGAGGAGGGCTGATCGTCGGGGAATTTCTAGTAAATTGAGAGCTCACAGACACAAACAGGACCTTATTGGGCGGATCAGGGATGTCACATCCCTGAGGGAAAGGAACATCAACTTCCACATctcgcttctctctctctctctcactccaaactcacataaacactcacacacatggaAATAACACCCATTACTCCTCATTCATCACTCAAACACTTACACCATGAATACCACCTCATCTGCTCATTTTAGCGATTATATATCTCTCTCTGCTATAGTCTTATGGTCTATCACTTTAAACACTCTTTAAAGCAGATTGGATTCTATTTGACTATCAATCTTTTTAGCGTTCATCTGCCGAAATAAAGTGATTCTACT

Function

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:1900449 regulation of glutamate receptor signaling pathway biological_process
GO:0051968 positive regulation of synaptic transmission, glutamatergic biological_process
GO:0043269 regulation of ion transport biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0050877 nervous system process biological_process
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:2001257 regulation of cation channel activity biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0034762 regulation of transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0022898 regulation of transmembrane transporter activity biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0032409 regulation of transporter activity biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0032412 regulation of ion transmembrane transporter activity biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:1904062 regulation of cation transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0098953 receptor diffusion trapping biological_process
GO:0098970 postsynaptic neurotransmitter receptor diffusion trapping biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0051049 regulation of transport biological_process
GO:0003008 system process biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0099601 regulation of neurotransmitter receptor activity biological_process
GO:0099628 neurotransmitter receptor diffusion trapping biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0098984 neuron to neuron synapse cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098793 presynapse cellular_component
GO:0098794 postsynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0032279 asymmetric synapse cellular_component
GO:0098797 plasma membrane protein complex cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0099095 ligand-gated anion channel activity molecular_function
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005237 inhibitory extracellular ligand-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015085 calcium ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000134629

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013755 lncRNA downstream 16144 10079393 ~ 10081707 (-) False XLOC_006467
TCONS_00013754 lncRNA downstream 17198 10077215 ~ 10080653 (-) False XLOC_006467
TCONS_00012543 lncRNA downstream 211281 9882302 ~ 9886570 (-) False XLOC_006465
TCONS_00012542 lncRNA downstream 211333 9878546 ~ 9886518 (-) False XLOC_006465
TCONS_00012544 lncRNA downstream 211573 9882407 ~ 9886278 (-) True XLOC_006465
TCONS_00013757 lncRNA upstream 31984 10150919 ~ 10232018 (-) False XLOC_006468
TCONS_00013758 lncRNA upstream 31984 10150919 ~ 10232078 (-) False XLOC_006468
TCONS_00013759 lncRNA upstream 33855 10152790 ~ 10231966 (-) True XLOC_006468
TCONS_00013464 lncRNA upstream 131239 10250174 ~ 10253034 (-) True XLOC_006469
TCONS_00013760 lncRNA upstream 156351 10275286 ~ 10346887 (-) False XLOC_006472
TCONS_00012545 mRNA downstream 202223 9889676 ~ 9895628 (-) False XLOC_006466
TCONS_00012546 mRNA downstream 202287 9890033 ~ 9895564 (-) True XLOC_006466
TCONS_00012541 mRNA downstream 211272 9878544 ~ 9886579 (-) False XLOC_006465
TCONS_00012540 mRNA downstream 222313 9855380 ~ 9875538 (-) True XLOC_006464
TCONS_00012539 mRNA downstream 256045 9831010 ~ 9841806 (-) True XLOC_006463
TCONS_00012549 mRNA upstream 139072 10258007 ~ 10261383 (-) True XLOC_006470
TCONS_00012553 mRNA upstream 241509 10360444 ~ 10620794 (-) False XLOC_006473
TCONS_00012554 mRNA upstream 241557 10360492 ~ 10431476 (-) False XLOC_006473
TCONS_00012555 mRNA upstream 375985 10494920 ~ 10620652 (-) True XLOC_006473
TCONS_00012556 mRNA upstream 530134 10649069 ~ 10672538 (-) True XLOC_006474
TCONS_00012530 other downstream 655519 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012528 other downstream 729316 9362226 ~ 9368535 (-) True XLOC_006453
TCONS_00012525 other downstream 730162 9361810 ~ 9367689 (-) False XLOC_006453
TCONS_00012519 other downstream 797610 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012477 other downstream 1088610 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012550 other upstream 145806 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012560 other upstream 793551 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012566 other upstream 901339 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012571 other upstream 1259081 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012573 other upstream 1446801 11565736 ~ 11565863 (-) True XLOC_006482