XLOC_006474 (slc3a1)


Basic Information

Item Value
gene id XLOC_006474
gene name slc3a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 10649069 ~ 10672538 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012556
ggtttattgtgtgtgtgtgtgggagagagagggATGGAGACTGAATGACTATTGTGCACTATGAACCTGTGAATGTCTCTATTTAACAGGACTCCGACTGTTTCTGTTCTCACAAGGAGCGCTGAAGAAATATGAGTTTGACCAGAGTCACCAACATCGACGCGGTGGAGCTGCAAGAAGGCATCCAGAACGCGGCCTTTcgggaggatgatgatgataataatggtGATATTGTGTGTATTCGGCGGGTCTCCAGCCTGCCAGAGGAGAGTGAATACACGCAGATCAAGCCGTATGCTGGGATGCCTAAAGAGGTGCTGATGTTGTACTCTAACAAGCCCTGTTATCGGATCCCTCGAGAAGTGATCTTCTGGCTGGTCATCGCCTGCACTCTGGCTCTTATTGCGATGACTGCGGCTATTGTGGCGCTGTCGCCTCGATGCATGAGCTGGTGGCAGCTGTCGCCCATCTATCAGGTTTACCCACGCTCATTTAAAGACTCCAATGCTGATGGGGTTGGGGATCTAAGAGGAATTAAGGAGAAACTGAGTCATTTCGAGTACCTGAACATTAAGGCGATCTGGATCAGTCCTTTCTACAAGTCTCCTATGAGGGACTTTGGATACGATGTGGAGGATTTCAGAGACGTTGACCCTCTTTTTGGAACAATGGAAGACTTTGATGACCTCTTGACTAGCATGCATGATAAAGGTTTGAAGCTGATCATGGACTACATCCCGAATCACACCAGTGACAAACACGTCTGGTTTCAGCTTAGCCGTAATTACACAGAGCCCTACACAGACTATTACATCTGGGTTAACTGCACAGCAGATAAACATCCAAACAACTGGGTGAGTGTTTTCGGGAATTCCACGTGGGAGTATGATGAAATACGGCAGCAGTGCTATTTCCATCAGTTCCTCAAGGAACAGCCAGATCTGAACTATCGTAACCCCCTGGTCCTACAGGAGATGACGGACATAATCCACTTCTGGCTGAAGAAAGGGGTGGACGGGTTTCGCATGGATGCTGTGAAGCACATGCTGGAGGCAACACATTTACGAGATGAACCTCAGGTTAACCCTGACCAAGATCCATCGACAGTGGACACAGAGTTTGAGCTGTATCATgactacacatacacacaagcaggACTCCATGAGATCCTGACAGACTGGAGGATACAGATGGACACATACAGCCGAGAGCCTGGCCGATACAGGTTTATGGTCATGGAAAGTTACGACTATGAAGAAATCGATAAAACCATGAGGTACTACGGCACAAACTACGCCAAGGAAAGCGACTTCCCGTTTAACTTCTATTTACTCGACCTTCCTGATAACCTGTCTGGAAATTATGCCAAAAGCATAGTTGAACGGTGGATGTCGAACATGCCAAAAGGAAAATGGCCAAACTGGGTGGTAGGAAACCATGATAAGCCGCGTATCGGTTCGAGTGCTGGTAAGGAATATGTGCGTGCTTTAAACATGCTGCTGCTGACACTGCCTGGAACTCCCACAACATACTATGGAGAAGAGATTGGCATGGTAGACGTCAACATATCTGTTATTCAGGATCCCGCTGGACAGTATGATCCAAGCAAGAGTCGAGACCCACAGCGAACACCAATGCAGTGGAATAATGAGCTCAATGCTGGTTTTAGCGAGAGTCTGAATGGCACATGGCTGGACATTGCTTCTGACTACAGAACGGTCAATGTGGAGGTTCAGCAGGATGATACAAGCTCCACCATTTCCCAGTATCGAGCTCTGAGTTTGCTCAGAAGTTCCAATGTGATTCTGTCTCGAGGTTGGTTCTGCTACGTCTGGAACGATGTCAATGTGTTCGCTTATTTGCGTGAGCTGGACGGTCTCAGTAAAGGCTTCCTGGTGGTTCTAAACTTCGGCAAGGAAACAACAACAGACCTGTCTTCAGTTAAAGAGTTACCAGATTCTCTCACACTCCATTTAAGTACAGAGTCAATAACCCAGACCGAGTTCCCTAAATCCAGAATCCCAACATCTCAAGGGCAGGGGTTGCTTCTGGAGTATTCCAGCAGTCAGAAGTTTCACCTCAACCATCAATCTCAGTGCTATGTGTCTGAGAAAGCCTGCTACCTGCCTGCACTAGATATCCTTTACCAGTGTTGAGGATTCCCACATatcaaaatttctctggcccagctttgGCCCACACACTCAGCTTTtacttggcccacatgccacagttAATTATGGTATATTATTgaaccaaatctggcttccatacaagggccaaccatggaccatatctgggccaagtttcAGCCAAGTTactaacccataactgggccagatatgttggtgtcaTCACTGCAATGAATtcgataaacccatgaagcattttgCGCTTTAAGGCCAAAGAGTTAAAGAGTTAACTCTTTGGTTAAAAAGTTAacactttttctcaaagtgaccagattggtaaaaaattttttttaaaacccaagctcattctgaaaacgtagtcctgtggacatttctggagactgtgaaatatGTCCCGGCaagtatgtatttgtgcagtttttgttttcacgaatccgcgaAAGGCCGCTGtttgcgctttttcgtatctcaaatgtccCTCGCTAGTGCCAttcgcgcccacgctgttctcgtgtgaacccaccagaggccccTGTCTGACTGACAGAATGACTGACTGCgcaaccggccaatcggctgacccaccctcctccttccctaaacccaaccaattttaccgattgacccacccacccgcttacttccctaaacccgagcaacaatttagaaaagctgtgtagaaaaaaaaaagccctcgtctgattttttttaccacatttttggatttcaccacgttctcaccctgttacgaacttgttcactttatttttttggattctgtttttgtcttacctgatttctggaatcgctcttccctggactTAAACCCGGTCACCATGGTCAACTCTTCCTCTTTGCACCTGAAGTCTGCCaacgtacacgatgagctgactggacaaactggttgcggcgggaaagccctccacacggaggtaagcgctCAGCCCGtgagcgcgaaagggaacagcgtcacaccgcctcatagcgttcacttaaaaaataattaaatgcggCCAtccgtacctcctgggacgtatttcgggGTCTTCACcaatgtccacgggactacgtttcagaatgagcctgggttgaaatctTTCTTTActtacaaataatttaaatgtattttaaaagtggatcAAGGTAGGCCaaacttatgtggcccacatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttacatctgggccaaatactacatttgatatctggcccaagtcttgtgtgccaccttaaaggtGGTGCCACCTCTGTGAAACCTGGGCCATGTGTGGCcaacatgctgtatgccagtgccagacgAATGCCTGcggtgccagctttatgccaaatctgggccagaattctttgctacctgggttatTTTTCCCAACCAGGCTGATTCAGTTCATCTATAAACATTTTCTCCTCTGGGTTTATCTTTCTATGCTATTCCTGTCCACTTCAAAACCTCATTGGTACAAAttgtgaaaaaatgttttttttctgaataatttTGATAATGTCTCAATTTTGTTCagtgtaatgtaataaaatacatgtttactGATAAA

Function

symbol description
slc3a1 Predicted to enable catalytic activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC3A1 (solute carrier family 3 member 1).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption
ko02000 Transporters
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-090313-225 Predicted to enable catalytic activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC3A1 (solute carrier family 3 member 1).

Ensembl:

ensembl_id ENSDARG00000017165

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012556 True 3754 mRNA 0.45 10 10649069 10672538

Neighbor

gene id symbol gene type direction distance location
XLOC_006473 camkmt coding downstream 28275 10360444 ~ 10620794 (-)
XLOC_006472 NA coding downstream 302179 10275286 ~ 10346890 (-)
XLOC_006470 six3a coding downstream 387686 10258007 ~ 10261383 (-)
XLOC_006469 NA coding downstream 396035 10250174 ~ 10253034 (-)
XLOC_006468 NA coding downstream 416991 10150919 ~ 10232078 (-)
XLOC_006475 ppm1ba coding upstream 9889 10682427 ~ 10731325 (-)
XLOC_006476 AL928999.1 coding upstream 239948 10912486 ~ 10912602 (-)
XLOC_006477 abcg8 coding upstream 253990 10926528 ~ 10945394 (-)
XLOC_006478 cep170aa coding upstream 308217 10980755 ~ 11072964 (-)
XLOC_006479 akt3a coding upstream 502670 11175208 ~ 11378392 (-)
XLOC_006471 BX537274.2 misc downstream 384164 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 9822844 825904 ~ 826225 (-)
XLOC_006467 NA non-coding downstream 530134 10077215 ~ 10118935 (-)
XLOC_006458 NA non-coding downstream 1090644 9501767 ~ 9558425 (-)
XLOC_006480 NA non-coding upstream 770300 11442838 ~ 11445780 (-)
XLOC_006482 CR556710.1 non-coding upstream 893198 11565736 ~ 11565863 (-)
XLOC_006492 CR792443.2 non-coding upstream 1301914 11974452 ~ 11974568 (-)
XLOC_006496 CR792443.1 non-coding upstream 1433240 12105778 ~ 12105894 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_09505405_09512610 NA coding CI01180000 null 9505405 ~ 9512878 (+)