XLOC_006450 (mrps26)


Basic Information

Item Value
gene id XLOC_006450
gene name mrps26
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9303554 ~ 9311253 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012520
ATCTAACTGTGGGTCGAGCAAAAGAAACATCTTCCGTGGTTAAAGTTCAAGAACATGGCAGCCCGAGTGTAGATGCTCAATGTTAGAAAGCCATGCTGGAATCTGTTAACGTTACTTTTGCTGCGCTTCTTTAGTATTTCAGACTTTGTGTTTTATGTAGACGCTTACCATTAATCATACACTCGTCAACATGTTGCGAGCTTTATCGCGGTGTCCGCTTCCTGCAGTCCGTCTTCTCGCCCCTCGCTCTGCTGTATTGGTCGAATCTGTCAGGGGAAGAAAATCTCGCACAGACCCCCAAGCGAAGTCAAAAATCGGACGGATCAAGACTCCTCCGCCCGTGGATCCAGTGGAAATGATCACCATGAAGGAGCGATACACGGAGTACAATCTGATCCTTAAAGCCCTGCGACTTGAGTTCAGGGAGAATATGTTGAGGAAGCGATATGAAGAGGAGGTTGGCTCCGTGGCAGAGGAGAGAGCAAAAAGAGATGCTGAAGAGCATAAATCCCTCATGGCCTGGAATGATGCTGAGAACCACAGATTACAAGTAATACGAGAGCAGCGCGTTCAGAAGGAGGCTGAGGCCGCAGAAGAGAAGAGGAAAGAAGCAGCGATGTTACATCAACAAGAGCTGGAGAACTACAttaaagagaaagaaagacaaattcTTCAACTACAGGAAGAGGCAAAGAACTTCATCACACTGGACAATCTAGATCAGCGGATTGAAGAGGCTCTCGACAATCCGATAAATTACAATTTTGCCATTGATAAACAAGGACGGGTTGTCAAACGGACTGCTTTTCAGTGATAATTACAAGGTTTGATGAAcaaaatatctgtatatataaAACTTATACTGTCTGTGTCAACATTTAAGCTGTTTAAATCAATTTTGTTTTCTCCAAATCACTTTAAATGAGTGTTTTTGACCTTGAGATTCTTTGttttgaagagtttttttttttcaaattgtattTCAAAGGTTCTTCATTTTTCAAAATTGGTTTAGGATGTATTTACTGATTTCTAAAAGTGCCACTGTCCAATGGTCTGGTatgcaaattaattataattactttaaatgttttgctTTCTTCATTAGCTTAAATATTTGTATCCTCACatgaatatttataaaattgAATGGCAGTTCACAATAGCTGCAAATATTATAAGTTCTTATTGAATAATTACACTCAATTAAGAACATAAAAGGTGGTTGATATGGTTCATCAATATGAAAACTAAAGATGTTTCGTcttttacaatattaaataacAGTTCCAtga

Function

symbol description
mrps26 Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS26 (mitochondrial ribosomal protein S26).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040718-115 Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS26 (mitochondrial ribosomal protein S26).

Ensembl:

ensembl_id ENSDARG00000039719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012520 True 1295 mRNA 0.39 4 9303554 9311253

Neighbor

gene id symbol gene type direction distance location
XLOC_006449 HTRA2 coding downstream 3255 9288383 ~ 9300299 (-)
XLOC_006448 HTRA2 coding downstream 19144 9261815 ~ 9284410 (-)
XLOC_006447 HTRA2 coding downstream 45823 9240925 ~ 9257731 (-)
XLOC_006446 si:dkey-33c12.11 coding downstream 90339 9188209 ~ 9213215 (-)
XLOC_006445 HTRA2 coding downstream 119376 9165861 ~ 9184178 (-)
XLOC_006451 si:dkey-33c12.3 coding upstream 2524 9313777 ~ 9318891 (-)
XLOC_006452 BX901922.1 coding upstream 22064 9333317 ~ 9335891 (-)
XLOC_006453 si:dkey-33c12.4 coding upstream 28666 9339919 ~ 9368535 (-)
XLOC_006454 grxcr1b coding upstream 129073 9440326 ~ 9442942 (-)
XLOC_006455 pimr152 coding upstream 135767 9447020 ~ 9450210 (-)
XLOC_006338 rn7sk misc downstream 8477329 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 953488 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 527077 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 648107 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 653503 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1073389 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1554353 7747111 ~ 7749201 (-)
XLOC_006458 NA non-coding upstream 190514 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 765962 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 839666 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 938921 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 964033 10275286 ~ 10346890 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_04978607_04980946 NA coding CI01180000 null 4978568 ~ 4980946 (-)