XLOC_006446 (si:dkey-33c12.11)


Basic Information

Item Value
gene id XLOC_006446
gene name si:dkey-33c12.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9188209 ~ 9213215 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012503
aactgttgtatttatgaataggTCAAGGATGAATCGACTCTCACAATTCATTTAAATCCACAgattcattttcaaaaaataacccactctaacctaaataaggactgaaCCGATGTAAATGCTAACAGTGTCATTGTTTTCTCCATTTCTCCAAGTCATCTGATGTGCGTCAAGGTGAATTTGTGGTTGCCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGCATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATTTTGGAAATTCAGGAGGGCCTCTCATAAACCTGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATGGAAAAGGCGTTACATTGGAGTGATGATGTTGACTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCGAACAGaGCCAGAATGAAGCCAGGAGATGTTATTATTGAGATCAATGGGGTAAAGGTGAACACGTCAGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAGAAGCTGTCATAGTTGGAGATGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACAGTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACACTTAAAGACCTTAATAAAACTGGGTGCTCTTATTGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGA
>TCONS_00012504
aacaaagcaactgttgtatttatgaataggTCAAGGATGAATCGACTCTCACAATTCATTTAAATCCACAgattcattttcaaaaaataacccactctaacctaaataaggactgaaCCGATGTAAATGCTAACAGTGTCATTGTTTTCTCCATTTCTCCAAGTCATCTGATGTGCGTCAAGGTGAATTTGTGGTTGCCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGCATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATGGAAAAGGCGTTACATTGGAGTGATGATGTTGACTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCGAACAGaGCCAGAATGAAGCCAGGAGATGTTATTATTGAGATCAATGGGGTAAAGGTGAACACGTCAGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAGAAGCTGTCATAGTTGGAGATGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACAGTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACACTTAAAGACCTTAATAAAACTGGGTGCTCTTATTGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGA
>TCONS_00012505
ATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGCATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATTTTGGAAATTCAGGAGGGCCTCTCATAAACCTGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATGGAAAAGGCGTTACATTGGAGTGATGATGTTGACTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCGAACAGGTCCAGAATGAAGCCAGGAGATGTTATTATTGAGATCAATGGGGTAAAGGTGAACACGTCAGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGA

Function

symbol description
si:dkey-33c12.11 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-29 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000093005

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012503 False 1226 mRNA 0.42 7 9188209 9213207
TCONS_00012504 False 1201 mRNA 0.42 6 9188209 9213215
TCONS_00012505 True 603 mRNA 0.49 6 9188641 9194595

Neighbor

gene id symbol gene type direction distance location
XLOC_006445 HTRA2 coding downstream 4031 9165861 ~ 9184178 (-)
XLOC_006444 HTRA2 coding downstream 96855 9074797 ~ 9091354 (-)
XLOC_006443 si:dkey-112g5.11 coding downstream 142327 9020301 ~ 9045882 (-)
XLOC_006441 plekhh2 coding downstream 295695 8847421 ~ 8892514 (-)
XLOC_006440 si:ch73-105b23.1 coding downstream 358817 8825192 ~ 8829392 (-)
XLOC_006447 HTRA2 coding upstream 27710 9240925 ~ 9257731 (-)
XLOC_006448 HTRA2 coding upstream 48600 9261815 ~ 9284410 (-)
XLOC_006449 HTRA2 coding upstream 75168 9288383 ~ 9300299 (-)
XLOC_006450 mrps26 coding upstream 90339 9303554 ~ 9311253 (-)
XLOC_006451 si:dkey-33c12.3 coding upstream 100562 9313777 ~ 9318891 (-)
XLOC_006338 rn7sk misc downstream 8361984 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1051526 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 411732 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 532762 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 538158 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 958044 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1439008 7747111 ~ 7749201 (-)
XLOC_006458 NA non-coding upstream 288552 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 864000 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 937704 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 1036959 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 1062071 10275286 ~ 10346890 (-)

Expression


Co-expression Network