XLOC_006443 (si:dkey-112g5.11)


Basic Information

Item Value
gene id XLOC_006443
gene name si:dkey-112g5.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9020301 ~ 9045882 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012478
ACTCTTCAGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATCGAAAAGGCGTTACATTGGAGTGATGATGTTGATTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGaGCCGGAATGAAGCCAGGACATGTTATTATTGAGATCAATGGGGTAAAGGTGAACATGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAAAAGCTGTCATAGTTGGAGCTGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACATTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACAAACACTCAACGACCTTAATAAAACTGGGTGCTCTTATAGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGATGATTTG
>TCONS_00012480
aaaGCAACTGTTGTGTTTATGAATAGGTCAAGGATGAATCGACtctcacaatttatttaaatccacagattcattcacaaaaaatAACCCACTCTAGCCTAAATAAGGACCGAACCTATGTGAACGCTAACAGACACCCCTTTTCTGGCCGTGAGGGACCCATCTCGAATGGCTCTGGCTTTATAATAAGTAGTGATGGCCTGATAGTGACAAATGCCCATGTGGTCAACAAGCGTGGTGTTCGTGTCAAACTGACCAATGGTGAGACTTACAGCGCCACAGTTCAGGATGTAGACCAGGCTGCAGACATCGCCACCATCAAAATCAATGTTAAGaatcctttACCAACGTTGCGTCTTGGCAAGTCATCTGATGTGCGTCAAGGTGAATTTGGGGTTACCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGAATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATTTTGGAAATGCAGGAGGGCCTCTCATAAACCTGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATCGAAAAGGCGTTACATTGGAGTGATGATGTTGATTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGaGCCGGAATGAAGCCAGGACATGTTATTATTGAGATCAATGGGGTAAAGGTGAACATGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAAAAGCTGTCATAGTTGGAGCTGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACATTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACAAACACTCAACGACCTTAATAAAACTGGGTGCTCTTATAGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGA
>TCONS_00012479
aaaGCAACTGTTGTGTTTATGAATAGGTCAAGGATGAATCGACtctcacaatttatttaaatccacagattcattcacaaaaaatAACCCACTCTAGCCTAAATAAGGACCGAACCTATGTGAACGCTAACAGaatcctttACCAACGTTGCGTCTTGGCAAGTCATCTGATGTGCGTCAAGGTGAATTTGGGGTTACCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGAATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATTTTGGAAATGCAGGAGGGCCTCTCATAAACCTGGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATCGAAAAGGCGTTACATTGGAGTGATGATGTTGATTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGaGCCGGAATGAAGCCAGGACATGTTATTATTGAGATCAATGGGGTAAAGGTGAACATGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAAAAGCTGTCATAGTTGGAGCTGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACATTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACAAACACTCAACGACCTTAATAAAACTGGGTGCTCTTATAGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGA
>TCONS_00012481
aacaaaGCAACTGTTGTGTTTATGAATAGGTCAAGGATGAATCGACtctcacaatttatttaaatccacagattcattcacaaaaaatAACCCACTCTAGCCTAAATAAGGACCGAACCTATGTGAACGCTAACAGaatcctttACCAACGTTGCGTCTTGGCAAGTCATCTGATGTGCGTCAAGGTGAATTTGGGGTTACCATGGGGAGCCCCTTTTCTCTTAAAAACACCATCACATCTGGAATCGTCAGCTCTGCTCAGAGAGGCAGTAAAGAACTGGGTCTCTCCAACTCCAACATGGACTACATCCAGACGGACGCTACCATAGATGATGGTGAGGTCATCGGCATTAATACCATGAAAGTGACAGCAGGGATTTCCTTCGCTATTCCCTCAGACAGAGTCCGTCTCTTCCTAGACCGATCTGCAGACAAACAGAAGTCTTGGTTTGGAGAATCGGGATCGAAAAGGCGTTACATTGGAGTGATGATGTTGATTTTGACCCCCAGTATAATCGAAGAGCTAAGGATGCGAGACCCGTCCTTCCCTGATGTTTCTCATGGAGTTCTCATCCACCGTGTGATTGTAGGATCTCCAGCCAACAGaGCCGGAATGAAGCCAGGACATGTTATTATTGAGATCAATGGGGTAAAGGTGAACATGTCGGAGGAGATATATAATGCTGTGAGGACCAGCGAAAGCTTAAATGTGGTGGTCCGCCGGGGGGCCGACCTGCTCATGCTGCACATGACCCCAGAGTCCACAGAGTGACATCAAGTCAAGTATTTAGTAAGATTAAGAAATGGTGAGTAATGAAAAGCTGTCATAGTTGGAGCTGTTGTAAGAAAGGAATCATCTAAAGAGTTGAACATTTTTAGCAAACGCTGGACATTCGTGTAGTAAACGTGTTTCTGGAAGCGTATGAAATAATGTGGATGATTCAGACTTCTGTACACTGgataaacctcagtgtgtctgcGCAAACTACACTATCAGTATTGATTTGAAGGAATATCACTGAATATTTTGTTTAGGATTGTCATGATGGCAACAAACACTCAACGACCTTAATAAAACTGGGTGCTCTTATAGTGAAAAtgctgatgttttgtattgagtctcacattctcatgttacgacgtttgtattttaatacatttttctgaacAGCTCTGATTTCACAATAAACCATTGGAATATTTATGGA

Function

symbol description
si:dkey-112g5.11 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012478 False 893 mRNA 0.42 4 9020301 9024004
TCONS_00012480 False 1440 mRNA 0.43 9 9020308 9045879
TCONS_00012479 False 1238 mRNA 0.43 7 9020308 9045879
TCONS_00012481 True 1208 mRNA 0.42 6 9020308 9045882

Neighbor

gene id symbol gene type direction distance location
XLOC_006441 plekhh2 coding downstream 127787 8847421 ~ 8892514 (-)
XLOC_006440 si:ch73-105b23.1 coding downstream 190909 8825192 ~ 8829392 (-)
XLOC_006439 si:ch73-105b23.6 coding downstream 204771 8799168 ~ 8815530 (-)
XLOC_006438 calm2a coding downstream 234691 8777633 ~ 8785610 (-)
XLOC_006437 NA coding downstream 243824 8760694 ~ 8776477 (-)
XLOC_006444 HTRA2 coding upstream 28915 9074797 ~ 9091354 (-)
XLOC_006445 HTRA2 coding upstream 119979 9165861 ~ 9184178 (-)
XLOC_006446 si:dkey-33c12.11 coding upstream 142327 9188209 ~ 9213215 (-)
XLOC_006447 HTRA2 coding upstream 195043 9240925 ~ 9257731 (-)
XLOC_006448 HTRA2 coding upstream 215933 9261815 ~ 9284410 (-)
XLOC_006338 rn7sk misc downstream 8194076 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 1218859 10264741 ~ 10264905 (-)
XLOC_006435 BX004962.2 non-coding downstream 364854 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 370250 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 790136 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1271100 7747111 ~ 7749201 (-)
XLOC_006458 NA non-coding upstream 455885 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 1031333 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 1105037 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 1204292 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 1229404 10275286 ~ 10346890 (-)

Expression


Co-expression Network