XLOC_006451 (si:dkey-33c12.3)


Basic Information

Item Value
gene id XLOC_006451
gene name si:dkey-33c12.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9313777 ~ 9318891 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012521
ACTGGTGCAGTGCCGGTTCATCTCCACTAATGGTGTGCAGAACAAGGGGgacttgaagaaaaaaaacttccaaCCAACAAAACATTAGCATCATTTGAaaaccaagcaaaaaaaaaaaaagcaacaaaaattacTTCATCATGAGCTTCGACCCTTTCACCACCTCCTCCCTCTCCCGGCGCTGGGAAGATTTCCAATCCAGCACCTCCACCTACCGAATCTCCAGGGGGCCCTTGTCCTCCTCCAGATGGGCCATGCGTTTGGAGCCTCTGCAGCGCTGGGACCAGAGCGACCTGAGTCAGGCCAGTTTAGTAAATGCAGAGCTGCTGGATCTGCGGGCCCAAGAACGAGAGCAGCTAGTGGGTCTGAATAACCGGTTTGCATCCTACATCGAGAAGGTCAGACACCTCGAGCAGCAAAACCGGGCTCTGCTTCTGCAGCTGGAAGCCCTGCGCCGCAGACAGAGTCAACCGTCCCGCGTGCAGCAGCTCTACCTGCAGGAGGTCCGGGGCCTCAGGGAGCAGCTGCACCAGGAGGCCCAGAATAAAGCACGCATGGAGGTGCAGATGGAGAAGCTGAGGGACGTCCACGCACAGCTGCACGAGCGCTGGGAAGAAGAGGCAAGGCGGCGGAGCCAGGCTGAGGAGGACCTGCAGCAGCTGCGGGACGAGACAGGTCAGGCTGCTCTGTGCATCTGCGATGCAGAGGCCAGTGTGGTCTCCCTGGTGCAGGAGCTGGCCTTCCTGAAGCAGGTGTTCGCTGAGGAGCAGGAGGGACTCAGGGTCCAGCTACAGGTGGCCAGCCTCAGCGTTGAGCTGGACACGAGCAGGCCAGACCTGTCGGCGGCTCTGAGAGAGATCCGGGCGCAGTATGAGAGCCTGGCCGGACGTAACATGCAGACTGCCGAGGCCTGGTTTCGGGGGAAGGTGGCGAGCGTAGTGGAGCTGACAGATAAGCAGGAGGAGGCTGTGCGCGTAGTACGTGAGGAGACAGCTGAGTACCGGCGCATGCTGCAGTCTCGTTCTGCTGAGGTCGAGGCACTGAGGAACGTCATCAATTCCCTGAACATACAGCTGGGAGAGCTGGAGGAGATGCAGAACTCTGAAGTCACCAAGTACCAGGGGAAGATAGGTGACCTAGAAAGGGACATTGGTGATGCGAAAGAAGAAATGTCTCGATATTTGAGGGAGTATCAGGATCTGCTTAATGTGAAGATGGCTTTGGATGTTGAGATTGCTGCTTACAGGAAACTCCTGGAAGGAGAAGAAATTCGGTTTACGTACTCCTCCCTCCCAGCCCTTGCTTAACCCTGGGTTCATACTCTGAACACAGTTGAGTCAGACCCAGCTTAAATCCTAAAACAATAACCTAAACATCATCCCTGACAGCTTTAATCATTTTCTCCAAAACCCCTGCTAAACTTGACCCAtcgtttaaagggatagttcgcccaaaaaCTCACATTCaagtgtttcaaacctttatatgTTTCTtattattctgctgaacacaaaagaagacattgtgaagaatgttggaaaccggaaGCCATAGACATTCATagtagaaaataaacaaatagtacGGTAGTCAATGGCTGCCAGTTTCcaaacattttccaaaatatcttctgttgtgcaTAACAGACACAAGGTTTGTGAGAAATAAATGGTGAGTAAAGGatgataaaattgtaattttggggtgaactaaccctttaagaccCCCTTTAACCAAATTTACCCGCAAAACCTTTACATTTACCTCAGATCCTAGTTCTTTAAGTTACTTCCACCCAATTCAGCCATGAAACTAAACCTCCTCATTTCATTGCTTCAAAGTCAGACGAGCCCTTGTGTCACACAAGAGGTCCACATAAAGAGGTCCCCCTTCTTCTTTACACTTGAAATGGACAAATGACCACCTTAGAGACATCCCTAGGGGTAGCACTCACTCAGCCAGAGCTCAGTGTCCTGTTGGCAGATTCTTACAGAGACTTGGAGATGGTTCCACTTAAAGAACACTTCACACACTTTAGAACCTTCACCTGTTGATCATCTGAGTCAATGATGACCCGATATATGCAGACTTTTAACCAATTGTTTGTTGAGGTGAATCATCGTGCTTTCTCAGTTGGCCTCGGGTGTTAGGAATGACCAATTTGTTAATTCGGCATTAGACCAAGAATCAGCCAACAGGACACCGTCCACCATCACTGGCTCTTTAGAGGATATGTTATTAGTGCAAAGGtttaaaagatagttcacccataaatgaaaaacctctcatcatttactcgctcACGAGTGGTTCCGTTACcttgaacacaaaaatatatatatatttattttaattaatgtattttggagaaagctgaaaacctgcaaccattgacttccatagtaggaaatgcAAATACTATAAGGTCAATGgtgtccaacatttttcaaaacatcttcttttgtgttcaacagaacaaagaaacgtGTAATGGATAAGTgaatgatagaattttcattttggggtgaattatctcTAAGTGTTTGCTATGTTTTGATGTGTTATTTTTCAGTTAATGTTGTAGTAATGTTTTATTTGCTGCGTCTGTGTTCTGCGTTTCATGTGTTGTTTTGTTGTGGATATTTGATTCTTTTTGCTTCAGCATTAGCAGTATTTCAAGCAGGACTAAAAATCAAGAGTAGATATGATGAGATGTCTAGGAGTGTTTTTGAACTTGAGGGTAAAATGCTACCATCATGCTGTCATCTGCTTTTGTTGTGTCATCTAAGTTATAACGCAAGTCAGTTATTAGTCATTTTGGAAATGAACAAGAAACCGATTCTGTCTATCGTGGCAGTTTCTGAACCGAATGGTGCTGTATGTTTGCACCTAAATTACACGATGAATAAAGCAACAGTACCTCTTCTGGA

Function

symbol description
si:dkey-33c12.3 Predicted to be located in intermediate filament.

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7320 Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDARG00000057881

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012521 True 2930 mRNA 0.46 3 9313777 9318891

Neighbor

gene id symbol gene type direction distance location
XLOC_006450 mrps26 coding downstream 2524 9303554 ~ 9311253 (-)
XLOC_006449 HTRA2 coding downstream 13478 9288383 ~ 9300299 (-)
XLOC_006448 HTRA2 coding downstream 29367 9261815 ~ 9284410 (-)
XLOC_006447 HTRA2 coding downstream 56046 9240925 ~ 9257731 (-)
XLOC_006446 si:dkey-33c12.11 coding downstream 100562 9188209 ~ 9213215 (-)
XLOC_006452 BX901922.1 coding upstream 14426 9333317 ~ 9335891 (-)
XLOC_006453 si:dkey-33c12.4 coding upstream 21028 9339919 ~ 9368535 (-)
XLOC_006454 grxcr1b coding upstream 121435 9440326 ~ 9442942 (-)
XLOC_006455 pimr152 coding upstream 128129 9447020 ~ 9450210 (-)
XLOC_006456 pimr152 coding upstream 145867 9464758 ~ 9467944 (-)
XLOC_006338 rn7sk misc downstream 8487552 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 945850 10264741 ~ 10264905 (-)
XLOC_006437 NA non-coding downstream 537300 8760694 ~ 8776477 (-)
XLOC_006435 BX004962.2 non-coding downstream 658330 8655119 ~ 8655447 (-)
XLOC_006434 BX004962.1 non-coding downstream 663726 8649711 ~ 8650051 (-)
XLOC_006428 NA non-coding downstream 1083612 8168713 ~ 8230165 (-)
XLOC_006426 NA non-coding downstream 1564576 7747111 ~ 7749201 (-)
XLOC_006458 NA non-coding upstream 182876 9501767 ~ 9558425 (-)
XLOC_006467 NA non-coding upstream 758324 10077215 ~ 10118935 (-)
XLOC_006468 NA non-coding upstream 832028 10150919 ~ 10232078 (-)
XLOC_006469 NA non-coding upstream 931283 10250174 ~ 10253034 (-)
XLOC_006472 NA non-coding upstream 956395 10275286 ~ 10346890 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_04982861_04987087 NA coding CI01180000 null 4982728 ~ 4987087 (-)