XLOC_006414 (tuba4l)


Basic Information

Item Value
gene id XLOC_006414
gene name tuba4l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 6245219 ~ 6252514 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012430
ATGCTTGTGTTTTGGTCAAACCAGAGGGAGTGCATCTCTATACACATTGGTCAAGCAGGTATCCAGATGGGTAACTCCTGCTGGGAGCTGTATTGTTTGGAGCATGGTTTCCAGCCAGATGGAACCATTGTTGATAGTAGCCGCTCATTGGCTGACTCTAGTTTCGGCACTTTCTTCAGTGAAACTGGTGCAGGAAAATATGTTCCTCGAGCAGTTTTCATTGATCTGGAGCCAACTGTTGTCGATGAGATCCGTAATGGACACTATCGACAGCTGTATCACCCTGAGCAGCTCATCAGTGGAAAGGAGGATGCTGCCAATAATTATGCTCGTGGCCACTATACCATTGGAAAGGAGATCGTAGACTCTGTGCTTGATCGCATGCGCAAAATGGCCGACCAGTGTACTGGTCTGCAGGGGTTTCTGATCTTCCACAGTTTTGGTGGTGGAACCGGCTCTGGTTTCACATCTCTGCTGATGGAGCGACTGTCTGTCGATTATGGTAAAAAGTCAAAGTTGGAGTTCTCCGTGTATCCTGCCCCGCAGGTCAGCACTGCTGTGGTGGAGCCCTACAACTCCATTCTCACAACCCACACCACTCTTGAGCACTCCGACTGCTCCTTCATGGTAGATAACGAAGCCATCTTTGACATCTGCAAGCGAAATCTGGATATCGAGCGTCCTTCCTACACCAATCTAAACCGGCTTATTGCTCAGATTGTGTCCTCCATTACAGCATCGCTGCGCTTTGATGGGGCCTTGAATGTGGATCTCACAGAGTTCCAGACCAATCTGGTCCCTTACCCTCGCATTCACTTTCCTCTGGTCACCTACTCTCCAATTATTTCAGCTGAGAAAGCCTACCACGAGCAGCTTTCAGTACCAGAGATCACCAATGCCTGCTTCGAGCCAGCAAACCAGATGGTGAAGTGCGACCCTCGCCGTGGGAAATACATGGCCTGCTGTTTGCTGTATCGTGGTGACGTAGTCCCTAAAGATGTCAATGCCGCCATAGCCAACATTAAGACACGCCGCTCCATCCAGTTCGTAGACTGGTGTCCCACTGGGTTCAAGGTTGGGATCAACTACCAGCCGCCCACTGTTGTGCCAGGAGGGGATCTGGCCAAGGTGCAGAGGGCTGTCTGCATGCTGAGCAACACCACTGCCATTGCAGAAGCATGGGGCCGCCTGGACCACAAATTTGACCTGATGTACGCAAAGAGAGCTTTCGTGCACTGGTATGTGGGTGAAGGGATGGAGGAAGGAGAGTTCTCGGAGGCGCGAGAGGACATGGCTGCCTTGGAAAAGGACTATGAGGAGGTTGCAGCCGATTCAACTGATGACTGCGGGGAGGATGAAGAAGAGTATTAAATTATTGCACttgtattttgaataaattttgaAAGCATAAGAAAACCAGTCTTGGTCTCATTTCCTGACATGGTAAGCTGAGGTTTAATTTCATGCATGTCTCAATGATAAAAGCTAATCTTACCCTAGCTTCTCCCCTGAAGTGACCAATAATAAAACTTAAACCAATTCAGAAGTTTTAGTATGTTCATCTTAGTGCTAGGCTAATTGAGTAGTCTTTGTAGGTGCCATCTGTTGCAGTGTTATGTACATTTTCAAATTGTAATCTAAACCCTTTTGTCTGGTGCTTGCTTCAAAGATTTTGGCtcacaaaagaaactcaaagtagTTCCTAGAATGTTGCAactttttactgttaaaatcctgcagaccaggggcctcatgtatcaacgctgcgtacgcacaaaaacattgcgtacgccaggtttcactctcagaatcgctcacgtttggatttactaacaatgaactgaacgtgggaatgtgcgcaggttcacggcagctttttggcaggcgtacgcacattttttgtgcgtgtctgttttatttccattggcgactcctagaggcagttgtgttaaattcttctctacaaagtgtctgagccttgcaatggcagctgtatgagacgggttcatctagtaggtatgtaagatttccataccatacagttgaccagctaaacattaaagcacaatttgcagcggtctcctgttttcccaatgtaatctgagcgatctactgcacgcacattgctataaagacactatctgaagatgaatttgcaagcgtgaatcagaaacatttccattcaataaatgtgcaaataaaatatgatgcacaaacttattaatgattcctactagtctttctcgtgataaatagtaggcaaaatatgatatgtagcgggggaaaaaaagaagatagaattcatcagacgctggattcgagccgagttcatgcttgaacgtgtcaaaacatgaccacatgcgtcttacgagcacgccactgagactgttcagagtactgcaacagtttacagatataaaccagactattttttttaaatgcactcagtgcgatgttcagacccaactgtgtcaaCCGCATCAGcttaactctcccactctatttttttttcttttgttgttaattccgaaaaacaaacttgcaaataacaccgcttttctccgatctacctccgaaagcagcacctccgattcacattctgttcaaattttctctttttgcttgcttttgccattgctttttcgttgggttttgccattagcatagtcattagcatattcatacgggggaggaggcagggaggggttttgtgctcgtgcatgttgcgctcagtttcacgttcattcggatgtacaaaagaatatgcgtgagagtcggcgtacgcagtgtttcatacatctgaatttttttctgcgtacgcacatttacagctttgtgcgtacgcaatgttttagtaagatttccacgcaagtcttcgtacatgaggccccaggggcctcatgtatcaacgctgcgtacgcacaaaaactttgcgtacgccaggtttcacgctcagaatcgctcacgtttggatttactaacaatgaactgaacgtgggaatgtgcgcaccttcacggcagctttctggctggcgtacgcacattttttgtgcgtgtctgttttatttccattggcgactcctagaggcagttgtgttaaattcttctctacaaagtgtctgagccttgcaatggcagctgtatgagacgggttcatatagtaggtatgtaagatttccataccatacagttgaccagctaaacattaaagcacaatttgcagcggtctcctgttttcccaatgtaatctgagctatctactgcacgcacattgctataaagacactatctgaagatgaatttgcatgcgtgaatcagaaacatttccattcaataaacgtgcaaataaaatatgatgcacaaacttattaatgattcctacttgtctttctcgtgataaatagtgggcaaaatctgatatgtagcgggaaaaaaagaagaaagaattc
>TCONS_00012431
GAAGATTAAGAAATCCGGCGGTCCATTTATTTGGGAGATCAGTTTGGCTCGACAGCAGTCTTATTTTTGTGACTGTTTCAAGGTTTTAAAAGTTCTGAATTTGTTCTGACTTTTGGTCAAGCACAATGAGGGAGTGCATCTCTATACACATTGGTCAAGCAGGTATCCAGATGGGTAACTCCTGCTGGGAGCTGTATTGTTTGGAGCATGGTTTCCAGCCAGATGGAACCATTGTTGATAGTAGCCGCTCATTGGCTGACTCTAGTTTCGGCACTTTCTTCAGTGAAACTGGTGCAGGAAAATATGTTCCTCGAGCAGTTTTCATTGATCTGGAGCCAACTGTTGTCGATGAGATCCGTAATGGACACTATCGACAGCTGTATCACCCTGAGCAGCTCATCAGTGGAAAGGAGGATGCTGCCAATAATTATGCTCGTGGCCACTATACCATTGGAAAGGAGATCGTAGACTCTGTGCTTGATCGCATGCGCAAAATGGCCGACCAGTGTACTGGTCTGCAGGGGTTTCTGATCTTCCACAGTTTTGGTGGTGGAACCGGCTCTGGTTTCACATCTCTGCTGATGGAGCGACTGTCTGTCGATTATGGTAAAAAGTCAAAGTTGGAGTTCTCCGTGTATCCTGCCCCGCAGGTCAGCACTGCTGTGGTGGAGCCCTACAACTCCATTCTCACAACCCACACCACTCTTGAGCACTCCGACTGCTCCTTCATGGTAGATAACGAAGCCATCTTTGACATCTGCAAGCGAAATCTGGATATCGAGCGTCCTTCCTACACCAATCTAAACCGGCTTATTGCTCAGATTGTGTCCTCCATTACAGCATCGCTGCGCTTTGATGGGGCCTTGAATGTGGATCTCACAGAGTTCCAGACCAATCTGGTCCCTTACCCTCGCATTCACTTTCCTCTGGTCACCTACTCTCCAATTATTTCAGCTGAGAAAGCCTACCACGAGCAGCTTTCAGTACCAGAGATCACCAATGCCTGCTTCGAGCCAGCAAACCAGATGGTGAAGTGCGACCCTCGCCGTGGGAAATACATGGCCTGCTGTTTGCTGTATCGTGGTGACGTAGTCCCTAAAGATGTCAATGCCGCCATAGCCAACATTAAGACACGCCGCTCCATCCAGTTCGTAGACTGGTGTCCCACTGGGTTCAAGGTTGGGATCAACTACCAGCCGCCCACTGTTGTGCCAGGAGGGGATCTGGCCAAGGTGCAGAGGGCTGTCTGCATGCTGAGCAACACCACTGCCATTGCAGAAGCATGGGGCCGCCTGGACCACAAATTTGACCTGATGTACGCAAAGAGAGCTTTCGTGCACTGGTATGTGGGTGAAGGGATGGAGGAAGGAGAGTTCTCGGAGGCGCGAGAGGACATGGCTGCCTTGGAAAAGGACTATGAGGAGGTTGCAGCCGATTCAACTGATGACTGCGGGGAGGATGAAGAAGAGTATTAAATTATTGCACttgtattttgaataaattttgaAAGCATAAG
>TCONS_00012432
CGTGTTTCTGCAGTGAGAAGATTAAGAAATCCGGCGGTCCATTTATTTGGGAGATCAGTTTGGCTCGACAGCAGTCTTATTTTTGTGACTGTTTCAAGGTTTTAAAAGTTCTGAATTTGTTCTGACTTTTGGTCAAGCACAATGAGGGAGTGCATCTCTATACACATTGGTCAAGCAGGTATCCAGATGGGTAACTCCTGCTGGGAGCTGTATTGTTTGGAGCATGGTTTCCAGCCAGATGGAACCATTGTTGATAGTAGCCGCTCATTGGCTGACTCTAGTTTCGGCACTTTCTTCAGTGAAACTGGTGCAGGAAAATATGTTCCTCGAGCAGTTTTCATTGATCTGGAGCCAACTGTTGTCGCTGTATCACCCTGAGCAGCTCATCAGTGGAAAGGAGGATGCTGCCAATAATTATGCTCGTGGCCACTATACCATTGGAAAGGAGATCGTAGACTCTGTGCTTGATCGCATGCGCAAAATGGCCGACCAGTGTACTGGTCTGCAGGGGTTTCTGATCTTCCACAGTTTTGGTGGTGGAACCGGCTCTGGTTTCACATCTCTGCTGATGGAGCGACTGTCTGTCGATTATGGTAAAAAGTCAAAGTTGGAGTTCTCCGTGTATCCTGCCCCGCAGGTCAGCACTGCTGTGGTGGAGCCCTACAACTCCATTCTCACAACCCACACCACTCTTGAGCACTCCGACTGCTCCTTCATGGTAGATAACGAAGCCATCTTTGACATCTGCAAGCGAAATCTGGATATCGAGCGT

Function

symbol description
tuba4l Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5588 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3).

Ensembl:

ensembl_id ENSDARG00000074289

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012430 False 3449 mRNA 0.45 3 6245219 6250317
TCONS_00012431 False 1516 mRNA 0.49 4 6247256 6252498
TCONS_00012432 True 772 nonsense_mediated_decay 0.48 4 6247987 6252514

Neighbor

gene id symbol gene type direction distance location
XLOC_006413 si:zfos-1056e6.1 coding downstream 26971 6208365 ~ 6218248 (-)
XLOC_006411 NA coding downstream 57475 6150221 ~ 6187744 (-)
XLOC_006412 CU984583.1 coding downstream 83655 6160581 ~ 6161564 (-)
XLOC_006410 dld coding downstream 163416 6075572 ~ 6081803 (-)
XLOC_006409 CABZ01033394.1 coding downstream 206742 6032844 ~ 6038477 (-)
XLOC_006415 agpat5 coding upstream 6878 6259392 ~ 6279684 (-)
XLOC_006416 mcph1 coding upstream 34080 6286594 ~ 6324011 (-)
XLOC_006417 NA coding upstream 82850 6335364 ~ 6338658 (-)
XLOC_006418 CABZ01061524.1 coding upstream 708268 6960782 ~ 7031033 (-)
XLOC_006419 NA coding upstream 901808 7154322 ~ 7154837 (-)
XLOC_006338 rn7sk misc downstream 5418994 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 4012227 10264741 ~ 10264905 (-)
XLOC_006406 NA non-coding downstream 512722 5730915 ~ 5732497 (-)
XLOC_006405 CR926469.1 non-coding downstream 620804 5579097 ~ 5624415 (-)
XLOC_006403 NA non-coding downstream 757606 5480987 ~ 5487613 (-)
XLOC_006421 NA non-coding upstream 1016698 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding upstream 1052901 7305415 ~ 7316939 (-)
XLOC_006426 NA non-coding upstream 1494597 7747111 ~ 7749201 (-)

Expression


Co-expression Network