XLOC_006411


Basic Information

Item Value
gene id XLOC_006411
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 6150221 ~ 6187744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013744
GACGATCATGCTGTCTGTGTAGTGTTTTTATCGGACCAGGTCACCCGTCCTCAAGTTCAGTCTGTTTTCACTCCAAGGTGTAAACAACAATAGTCTGACAACACGCTACATTGAACTGACATCACAGCAGCAAATACATAAATTCCAGCTCCAACCTGAAAAAAGTGGTGGATCAAGGCAACTCAAGCCAGAGCCGTGGAGACTGAAGCCTCTGTGAATCATGGAGGATGCAAATGTGCCATTAAAGCCACTGACCTCAGGATCAAAGAGCACCTGTGAGGAATAACAGCCATGACCTCCACCATGAATGATCATAATGGACGCATCACCTGAGAGCGAACACCTCCTGTCCTGTGTCTTCAGAGGAATGTGACCCCTAATGCTATGCCTTCACCCCGGCTTTCATGCATGTGACTGACATTAGGGTGTTCTCTTTCAGATATTTCAGAGAGGCTCTATTGACTTTACCTCAAAATAGAGTCATAAACAGGAAAGGCAGGTATTCAGAGCAAAACTATCCCAATGGACAGTCAAAACTAGCCAAAAACTAGCCCAATAGCCAGTCGAAACCAGCCCAAAACTAACCCAATGGTCAGTCAAAACTAGccaaaaactagcccaatggccagtCGAAACCAGCCCAAAACTAACCCAATGGTCAGTCAAAACTAGccaaaaactagcccaatggccatTCGAAACCATCCCAAAACTAACCCAATAGCCAGTCGAAACCAGCCCCAAACTGATCCAATGGTCAGTTAAAACTAGCCAAAAACCAGCTTAATGGCCATTCAAAACTAGCCCATTTGCCACTGAAAACTAGCTCAAAACTAACCCATTGGCCAGTTAAAACTAGCCCAAAAGAGCAAACAAAACTAGCCAAAAATGTACATATTGGCAAGTCAAAACTAGctaaaaactagcccaatggGCAGTCAAAGCTAGCCCAAAATTAACCCAAATGTcagtcaaaactagcccaatggtcAGTCAAAACAAGCACAAAACTAACTCAATGGCCagtcaaaaaataacaaaataaaataaaaaaaggccactgaaaactagcccaaaactaacCCGACGGTCCGTCAAAACATACCAAACTAGCCAAAATCTAATTCAACAGCCAGTCAAAACTAGCCAAAAACTAGCACAATGACCAGACAAAACAACCCAAAACCAGCCCAAAATAAGCCCAACTGAGCATACGAAACTAGACAAAAATTAGCCCAttggccaatcaaaactagccaaaAAACTAGCTTAAATGGGCAATCAAAACTAGGCCAAAATTAACTCAACTGCAAGGCAAAACTAGTCCAATGGCCAGTCAAAACTATTCAAAAACTAGCCTGATGACCAGTCAAAACAACCCAAACCTAGCCCAATTGGcagtcaaaactagcccaaaataAGCCCAAATGGGCAAACAAAACTAGCAAAAAACAAACACGTTAGGTCAATGAAAACTAGCCACAAGACTAGTCTAAATGGACAAAGAAAACTAGCACAAAATCAACCCAATTGCAAGTCAAAACAAGCCGAATGGACAGTCAAAACAACTGAGCAAGCAAAACTAGCCAAAAAGTAGCCATtgtccaatcaaaactagccaaaactagcccaaaattAACTCAATTGACAGTCAAAACTAACCCAATGGCCAGTCAAAACTAGTCCAATGGCCACTGAAACCTAGCTCAAAACTAATCCAATGGCCAGTCAAAACTAGCGAAAAAACTAACCCAATGGTCAGTCATAACTAGCCAAAACCTAGCCTAATGACCAGTCAAAACTAGCACAAAACTAACTCAATGGCCAgtgaaaactagcccaatggccacTGAAAACTAGCTAAAAACTAACCCAATAGCCAATCAAAACTTGCCCAAAATAAGCCCAAATGggcaaacaaaactaaaaattaacCCATTGATTAATCAAAACTCGCCAAAAAACTAGCCTAATCGGACAATCAAAACTACTACAAAATTAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013744 True 2003 lncRNA 0.41 2 6150221 6187744

Neighbor

gene id symbol gene type direction distance location
XLOC_006410 dld coding downstream 68418 6075572 ~ 6081803 (-)
XLOC_006409 CABZ01033394.1 coding downstream 111744 6032844 ~ 6038477 (-)
XLOC_006408 actr2b coding downstream 171788 5946607 ~ 5978433 (-)
XLOC_006407 spred2b coding downstream 213187 5870644 ~ 5937034 (-)
XLOC_006406 NA coding downstream 417724 5730915 ~ 5732497 (-)
XLOC_006413 si:zfos-1056e6.1 coding upstream 20621 6208365 ~ 6218248 (-)
XLOC_006414 tuba4l coding upstream 57475 6245219 ~ 6252514 (-)
XLOC_006415 agpat5 coding upstream 71648 6259392 ~ 6279684 (-)
XLOC_006416 mcph1 coding upstream 98850 6286594 ~ 6324011 (-)
XLOC_006417 NA coding upstream 147620 6335364 ~ 6338658 (-)
XLOC_006338 rn7sk misc downstream 5323996 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 4076997 10264741 ~ 10264905 (-)
XLOC_006405 CR926469.1 non-coding downstream 525806 5579097 ~ 5624415 (-)
XLOC_006403 NA non-coding downstream 662608 5480987 ~ 5487613 (-)
XLOC_006402 NA non-coding downstream 678632 5464154 ~ 5471589 (-)
XLOC_006401 NA non-coding downstream 754301 5390497 ~ 5395920 (-)
XLOC_006419 NA non-coding upstream 966578 7154322 ~ 7154837 (-)
XLOC_006421 NA non-coding upstream 1081468 7269212 ~ 7322676 (-)
XLOC_006422 NA non-coding upstream 1117671 7305415 ~ 7316939 (-)
XLOC_006426 NA non-coding upstream 1559367 7747111 ~ 7749201 (-)

Expression


Co-expression Network