XLOC_006402


Basic Information

Item Value
gene id XLOC_006402
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 5464154 ~ 5471589 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013741
aaaataatgCAATGTCAGCATAAGAATTTGAACCaaaactctttatttaaaaataggctcAAAAAAGAAaccatcaattaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatctcaaGATGAAAAGCTTCAGCATATTTTCACATTCTTTACAAATTTTCCACAATAGTTTACAAACATTTGTAGATGGAAGTTAAGAATGCATGTCATTAGATTGTCTTAAAATCCTTATTGTCTGAATAACACATTTGCTTTTTGTCATTTGCTGCTTTCTATGCTATTATCATTTCCAAAAACATGTATGGtgtattttaaataactaaaaataatgcAATGTCAGCATAAGAATTTGAACCgaaacactttatttaaaaataggcacaaaaaatgtattatcattttataaaaacaagtcaatcaatcaatcaatcaatcaatcaaacaaaaagCTTTAACATAATTTTACAAACATCTCAATGACGAATCCAAGCAGGTTGAGAACACTTGTGGATAAAAGTTAAGAATGGGAGTCATTAGATTGTCTTGACATTTTTATTGTCTGAATAACACATTTGCTTTTTGTCATTTGCTTCTTTCTATGCtattgtgattttcaaaaatacttagtcaaaatattactttttaatgtatggtgtatttttaataattgaaatcaTGCAATGCCAGCATAAGAATTTGAACCAAAACACTTTAATTAAAAATAGGCTCAAAAAAGAAACCATCACTTGATAAAATAagtcaaatcaatcaatcaacaaatcaagatgataatatataatacatattttcaCATTCTTtacagaaattcaacaatattTCACAAACACCCCAGTGACTAATCCAAGCACTTTGATGACACTTGTGGATGGAAGCTAAGAATGTGTTTTAAGCTTTGAAAAAAAATAGTATCgccataattttttttagttcCCAAGAATCTTCCTAAAAGGACCAATctgattttttaacacatcattCAGATTTGTTTTGTGACAAACTGCATCTAGTAACCAATGTTTCGTTCACAATATGAacacactcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgctcagCGGTCAACTGATTTGTTAACTGCTAATGTTGTTTATGTGTTAAAAAGTTTAAGCTCTAATATATATCTATTACATATATcgatatattgttatatttttaatcaaatgacCTCGCCCTGTCGTGATTTTTATAActgtttcaccagcactcttaattattgatgatacaaaTGCACGCTTCATAGCTGATCTATGTTAAATAGATAAAAAACTTTCTCTACCTTCCATGTTtttctttatagttttttttgtttgtttgttttttttggaggaaatattatttattactgtttattttaattgttagtatttattaatattactatccattgaattaaaaaaacacaGTCAGGAAGGTgttataataacctatagttaggCTATATATTGGAGTATTTTCAACTGCTCTCGTTAAATAGAATTTGTATAATAGTCATACTGGCTACTTTAATTACTATATGATATGCTGTTCAAAGCTTGGTGGGTGTTCTTTGTAATTCTATGAAAAACACTGACAGTACAATTGCTTAAAGATCCTCCTTTTTTTATCCACTGAAAGCAAAGCCAGTTGTGCATGTTTGGAACAAAATGAGGATGAGCAAAGGATGACAGGTTTTCATCATCCTTTGAAGTAGCTGTTTCCATACTtccatttttttaatgcaacaaTCAAGCTGCTCAAAAGACTTTTTTTAATCATGGAACTGATTGTGAACAAAAAGCAAACAGACACTTAATCCTGACAGAGAGAACAACTTGACATCAATTTGTCCCTGGAGGGGACAGACTGTGAGTACTCAGGTCTCCTttccacagcacacacacatgaatacCCCTGTATCCCTCCATTCAGAACTCTGTGCCCCAGTGATAAATCCATAATCAAAATCAAGGgatatctatatttattttaactcCAAGTCCTCATTCGTTTCTTAAAGAATGCTCTCTACACATGGAATCCCCATCGTGCAGGAACTTTAGTgattgagagtttttttttttttagacttttgGATCCCCGAGGGAGAGGTCAGCGGGCCAGAACACACTGGTGCGGACAGAGGGAGTCACCCGTCCCCTATTCCCAGACTCTCTACATTGCCGTCCCTCAAAAGCAGAGGCCCAGGCCAAGGGGAATGGGGGGGGGAGTGTGTGTAGAGGCCCACTCAAACTCACCCCCACTTTTCCCCTGCTCCATAAGGCCTGACAGCTCCCCACGTTCTCAGACCCTTTTGGACAATTTCAACACCGTGTCCATCTGGTTCTGATTAAGTCCCAACTGGCCTGCATCGCATCCAAAGAGACGAGACCGTGATGGAGAAGAAAGGAGGGAAAGGGGGCAAGGTGAGAACGAGGAAGAAATGGCAGCCGAAGCATAACAAAGCCAGATCGACAGAGACTGACTGAGAGCCGATGCCAACAGAAGAGAGATCTGTAACGGATGCCCAACATGGGCGTCATTACCGAAACACTGTATCGTTACATCAATGGCCCTGCCATGGCCAAAAGACATTATTTGGAGAGAGTATCCAGCTTGTAGCTGGTGTTTATTAGCCTCTCTTCTGGCACCTGCTCCCACACAGAGCATGCCAACAGTCTTCCTCGGCTCATTCTGCCTCTCACTATCAAACTAATGATCGCGGTTATACCACAAACTGAAAATCAACCACAAAACCAATCATAGTGTCAATTTTGGGAAATTGAGATTAACATAtgatctgaaagctgaataattatgggtcacactttactttgatggtgagtttgttgaattgaagttacattgcatctacatgccaactaattctcattagattgtaaGTAGCTTGGGGTTAGCATTGGTTAGTTTAAGTTAACATGTATTCGCAAAGTTTCCTATAGTCAAttgaatgtctgttgaatgagcaGTATCAACAAATGTTCAACAGACAGTTTacttatactcaaatggaccaaaaaaataaagtgtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013741 True 3085 lncRNA 0.35 2 5464154 5471589

Neighbor

gene id symbol gene type direction distance location
XLOC_006401 NA coding downstream 68234 5390497 ~ 5395920 (-)
XLOC_006400 NA coding downstream 98244 5360309 ~ 5365910 (-)
XLOC_006399 si:dkey-78p8.1 coding downstream 206851 5243167 ~ 5257303 (-)
XLOC_006398 slc29a3 coding downstream 384643 5069552 ~ 5079511 (-)
XLOC_006397 abcg2c coding downstream 398615 5031197 ~ 5065539 (-)
XLOC_006403 NA coding upstream 9398 5480987 ~ 5487613 (-)
XLOC_006404 meis1b coding upstream 18962 5490551 ~ 5569562 (-)
XLOC_006405 CR926469.1 coding upstream 107508 5579097 ~ 5624415 (-)
XLOC_006406 NA coding upstream 259326 5730915 ~ 5732497 (-)
XLOC_006407 spred2b coding upstream 399055 5870644 ~ 5937034 (-)
XLOC_006338 rn7sk misc downstream 4637929 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 4793152 10264741 ~ 10264905 (-)
XLOC_006394 NA non-coding downstream 744761 4717790 ~ 4719393 (-)
XLOC_006393 CU856520.1 non-coding downstream 750048 4712421 ~ 4714106 (-)
XLOC_006390 CR854838.1 non-coding downstream 1016501 4445553 ~ 4447653 (-)
XLOC_006411 NA non-coding upstream 678632 6150221 ~ 6187744 (-)
XLOC_006412 CU984583.1 non-coding upstream 688992 6160581 ~ 6161564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G183092 NA non-coding NW_025048111.1 JAEQBD010000456.1 138558 ~ 138841 (-)