XLOC_006393 (CU856520.1)


Basic Information

Item Value
gene id XLOC_006393
gene name CU856520.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4712421 ~ 4714106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012406
AATCTCAAAGTCTGGTGGGtggacttttagcttagcttagcatacataattgaatcagattagaccattagcatcttgctcaattTTATGGtataattttccaatttaaatCTTAAATCTTCTGTAGTAActttgtgtactaagactgatggaaaatgaaaagttgctattttctaggccgatATAGCTAGGAACTTTACTCTTGTTCtagtgtaataatcaaggaactttgctgacATATCCCGCTGTAGCCGCTAAGACATTACACGGTGTtgttacctagctggggactattttcaggagcTGCATATTATAATCACAGCAAAGCCCCCTGATTATTACACCAGAGTGAGTGTATAGTTCCTAAACATATCAGCTAcattagatgctaatggtccaatctgtttcaatgatttatgctaagctaagctaaaagtgctcccgccacaCTTGAAGATTGGCTGTAATGATAAAACTCGACTGTTTAGCTCCTGGTCTCTTGAAAAAGGACTccgtttataaaaaagaaaaagtggagCGCTCCTTTTTGATCACCCTAAAGGAAATGACTGAATCATTATACATGTTTTAATTCTTAACCTTAAAAGCTCACTGGTTGAATAAGATACCATTGGAGAAACTGTGAGGTTGTTAATGAAAGTCAGAATCAAGGGCACTGTGCACATTAATGACACTAAATAAATGAGAGTTGTCCATCTTGTTGTCATGATTGACGATTTTAAATTCGTAGATGGTCCATAGCAGTACAAAACAGGTGaaatatatccatccattctGCCTTATTTGACCCATAATCATAAACTCAGCCTAAAACACACTCCAAGATAAAGTCGCTGagcaaaaacactacagtatcaTCTGCTCAAGGATGCCCAGTACACTGACTTCCCGAGACATACAGTTGATGTCGGGACTCGGGTCGGGCCATTATCTCAACTTCAGTTGAACttcttttagtttattcattgtgttttatgtatgtttcagggttttatttttttattataataataataatatatcaaatatatatggAATCTATTCTAAAGCGGGTGTTGCATGAATGTATGTTTAAATGgggaaattatatataaatgaataaaaaaagcaaaGATTATTATGAATGCTGATTGCAGATTAACAGACTTCAGTTCAACAAGagtttttggatattttttatttcttctttctcCCTCCATGACCTTTATACCCTTGATTTAGCCGGTCTTTGCTCTCTCAGTCTTGATGCTGTAGCTCTATTGCTGCAGCGCTGCCTTTTATTCAAAACACTGATCTGAGAACAGAGCGTATAGGAGACTTCAGCGCATTATATATTCTTCTCAAACACCCATTTCTTTAGCTCCTTATCATACTCCTACACTGATTATTATGTTGCTATTGTTGTTTTAAATACGTTTTCTTCATGTGCActtaaaattaaaactatattttgggggggaaaaaacacaaaaaaacaaggaaaatgtgtgacatttggatgaaaaccatttttttcatattcattTGTTGGTTTCATCATTGGCATCGGATGCTGTAATGTTAGAAgaatttaaaaatgacaatgtaaaatccTGTATCATTTATGAAATGTGTATAAAAGAGAAATGTAATTCAATTATCAATAAATACTTATCCAATTTTGGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0031175 neuron projection development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0150034 distal axon cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:1901681 sulfur compound binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012406 True 1686 lncRNA 0.35 1 4712421 4714106

Neighbor

gene id symbol gene type direction distance location
XLOC_006392 oit3 coding downstream 5403 4685309 ~ 4707018 (-)
XLOC_006391 c1d coding downstream 48018 4656504 ~ 4664403 (-)
XLOC_006390 CR854838.1 coding downstream 264768 4445553 ~ 4447653 (-)
XLOC_006389 NA coding downstream 303935 4407857 ~ 4408486 (-)
XLOC_006388 NA coding downstream 305349 4405292 ~ 4407072 (-)
XLOC_006394 NA coding upstream 3684 4717790 ~ 4719393 (-)
XLOC_006395 mcu coding upstream 8094 4722200 ~ 4848889 (-)
XLOC_006396 nolc1 coding upstream 259105 4973211 ~ 4992395 (-)
XLOC_006397 abcg2c coding upstream 317091 5031197 ~ 5065539 (-)
XLOC_006398 slc29a3 coding upstream 355446 5069552 ~ 5079511 (-)
XLOC_006338 rn7sk misc downstream 3886196 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 5550635 10264741 ~ 10264905 (-)
XLOC_006382 NA non-coding downstream 751150 3960097 ~ 3961271 (-)
XLOC_006376 AL935294.1 non-coding downstream 1469163 3198438 ~ 3243258 (-)
XLOC_006400 NA non-coding upstream 646203 5360309 ~ 5365910 (-)
XLOC_006401 NA non-coding upstream 676391 5390497 ~ 5395920 (-)
XLOC_006402 NA non-coding upstream 750048 5464154 ~ 5471589 (-)
XLOC_006403 NA non-coding upstream 766881 5480987 ~ 5487613 (-)

Expression


Co-expression Network