XLOC_006382


Basic Information

Item Value
gene id XLOC_006382
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3960097 ~ 3961271 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013731
gcaaaatctctgagaaatatttccagtgccttgttgaaccTGTGCCAtgaagtattaaggcagttctgaaggcaaaagggggtgtacctaataaagtggccgTACTGCGTGTGTGATATACCTGTGCTGACTGATTGGTGAGGCCGGTTCCCTCCAGGTCCAGAACTTCTAGGGTTCGACTGGATGCCACTGCGACAGCCAACATCCCAGCAATGTGATCCCCTGAAAACACAAACTGAAGGCTCAGAGCGCAATACGCAATCCTGCTGAATTTCACAGTGCAAACTCTGCACTTCTCCAGCAGACAAATGTGGACACTTCATACCCCGGGGAGCAACGGTCAGCAAAATAAATGTCTCTGTATATATACATCATCGACCCCATCCATTATACTTCAGAGAAAGACATGCGGTGCTTGAAAGACTTATCTGTTAAACCAAAGTGTGTTGCTGATTAAAAAGGCTTTAAAGCTGTACAGTAAGCAGAGGTGCAGTTAATGAGAAACAGAACAGAaaacagaaaattctgtcatcctttaGACATTCATGTGTTTGTAATGTCTTAACTattctagtttttaatagcagatggtgctctaggctagtttttaactgcagatgacgctctaggctgtcttttaacagcagatggcgctccaggtttgttttttaacagcagacggtgctctagcctagtttttaacagcagacggcactctctaggttagtttttaacagcagacagcgctctaggctagtttttaacagcagacggcgctctagcctagtttttaacagtagacagcgctctagtctagtttttaacagcagacggcgctctagcctagtttttaacagcagacggtgctctaggctggtgctctaggctagtttttaacagcagacggtgctctaggctggtgctctaggctagtttttaacagcagacagcgctctcgaggttagtttttaacagcagatggcgctctaggttagtttttaacaacaggtggcgctttaggctagtctTTATCTGCAGACAGCActctctaggttagtttttaacagcagatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013731 True 1073 lncRNA 0.45 2 3960097 3961271

Neighbor

gene id symbol gene type direction distance location
XLOC_006381 ncoa4 coding downstream 23542 3915260 ~ 3936555 (-)
XLOC_006380 si:ch211-128m15.3 coding downstream 80774 3874415 ~ 3879323 (-)
XLOC_006379 prkn coding downstream 443624 3354895 ~ 3516473 (-)
XLOC_006378 si:ch73-193i2.2 coding downstream 608389 3327417 ~ 3351708 (-)
XLOC_006377 ubr2 coding downstream 635324 3263853 ~ 3324773 (-)
XLOC_006383 tjap1 coding upstream 18070 3979341 ~ 4134141 (-)
XLOC_006384 dnph1 coding upstream 257058 4218329 ~ 4223955 (-)
XLOC_006385 ppp2r5d coding upstream 271297 4232568 ~ 4303641 (-)
XLOC_006386 znf318 coding upstream 346312 4307583 ~ 4333181 (-)
XLOC_006387 si:dkeyp-121d4.3 coding upstream 377611 4338882 ~ 4396657 (-)
XLOC_006338 rn7sk misc downstream 3133872 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 6303470 10264741 ~ 10264905 (-)
XLOC_006376 AL935294.1 non-coding downstream 716839 3198438 ~ 3243258 (-)
XLOC_006374 LO018354.1 non-coding downstream 905160 3054823 ~ 3054937 (-)
XLOC_006372 NA non-coding downstream 1035973 2919298 ~ 2924124 (-)
XLOC_006371 NA non-coding downstream 1051942 2899327 ~ 2908155 (-)
XLOC_006370 BX571701.3 non-coding downstream 1100686 2857461 ~ 2859411 (-)
XLOC_006388 NA non-coding upstream 444021 4405292 ~ 4407072 (-)
XLOC_006389 NA non-coding upstream 446586 4407857 ~ 4408486 (-)
XLOC_006390 CR854838.1 non-coding upstream 484282 4445553 ~ 4447653 (-)
XLOC_006393 CU856520.1 non-coding upstream 751150 4712421 ~ 4714106 (-)
XLOC_006394 NA non-coding upstream 756519 4717790 ~ 4719393 (-)

Expression


Co-expression Network