XLOC_006384 (dnph1)


Basic Information

Item Value
gene id XLOC_006384
gene name dnph1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4218329 ~ 4223955 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012394
GCAGTTTATCTGAACTTCCCGTGAATGCTGTGCTGCTGAGAAAAGCACGCTTGTATCACAGAAGAAAGACGAGGACTCCTGCAAATTATGAACATATACTTTTGCGGAAGCATTCGGGGAGGGCGACAGGACGTGGTTATTTATCAGACAATAGTGAAGAAGTTGCAGCAGTATGGCAATGTTTTAACCGAGCATGTGAAGATAAAGATGGAGATAAAGCCATTCATGATCGGGATGTGCAGTGGCTGACGATGTCTGACGTGATAGTAGCAGAAGTGACGCAGCCATCTTTAGGTGTTGGTTATGAACTGGGCCGAGCTGTGGCAATGAACAAGAGGATCCTCTGTCTCTTCAGACCTTTTTCTGGAAAAGTGCTCTCCGCCATGATCAGAGGAGCGTCAGCCAAACCACTCTTCCAAGTACAAGACTACAAAGAGGACGAAGTGGAGAACATCTTGGAGGAATATTTTGAGACTCTCACTAAGAACTGATGAGCAGCTGATCATAACAAATCCTATGTGCTGCTCTTATTCAAATCAACAGGACTGCTTTGGTAAGCATTTGTAGTGAAAATGCATATTAAGCATACACAGTGTATTGTTACTTGCTCTTGAATAAATCTGGTTTTGTTAACAACAC
>TCONS_00012393
GCAGTTTATCTGAACTTCCCGTGAATGCTGTGCTGCTGAGAAAAGCACGCTTGTATCACAGAAGAAAGACGAGGACTCCTGCAAATTATGAACATATACTTTTGCGGAAGCATTCGGGGAGGGCGACAGGACGTGGTTATTTATCAGACAATAGTGAAGAAGTTGCAGCAGTATGGCAATGTTTTAACCGAGCATGTGAGTTATGACAGCCTGTCTGACAAGGGTGAAGATAAAGATGGAGATAAAGCCATTCATGATCGGGATGTGCAGTGGCTGACGATGTCTGACGTGATAGTAGCAGAAGTGACGCAGCCATCTTTAGGTGTTGGTTATGAACTGGGCCGAGCTGTGGCAATGAACAAGAGGATCCTCTGTCTCTTCAGACCTTTTTCTGGAAAAGTGCTCTCCGCCATGATCAGAGGAGCGTCAGCCAAACCACTCTTCCAAGTACAAGACTACAAAGAGGACGAAGTGGAGAACATCTTGGAGGAATATTTTGAGACTCTCACTAAGAACTGATGAGCAGCTGATCATAACAAATCCTATGTGCTGCTCTTATTCAAATCAACAGGACTGCTTTGGTAAGCATTTGTAGTGAAAATGCATATTAAGCATACACAGTGTATTGTTACTTGCTCTTGAATAAATCTGGTTTTGTTAACAACAC

Function

symbol description
dnph1 Predicted to enable deoxyribonucleoside 5'-monophosphate N-glycosidase activity. Predicted to be involved in deoxyribonucleoside monophosphate catabolic process and positive regulation of cell growth. Predicted to be located in nucleus. Orthologous to human DNPH1 (2'-deoxynucleoside 5'-phosphate N-hydrolase 1).

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0009159 deoxyribonucleoside monophosphate catabolic process biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-5 Predicted to enable deoxyribonucleoside 5'-monophosphate N-glycosidase activity. Predicted to be involved in deoxyribonucleoside monophosphate catabolic process and positive regulation of cell growth. Predicted to be located in nucleus. Orthologous to human DNPH1 (2'-deoxynucleoside 5'-phosphate N-hydrolase 1).

Ensembl:

ensembl_id ENSDARG00000075730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012394 False 639 nonsense_mediated_decay 0.43 4 4218329 4223955
TCONS_00012393 True 667 mRNA 0.44 4 4218329 4223955

Neighbor

gene id symbol gene type direction distance location
XLOC_006383 tjap1 coding downstream 84188 3979341 ~ 4134141 (-)
XLOC_006382 NA coding downstream 257058 3960097 ~ 3961271 (-)
XLOC_006381 ncoa4 coding downstream 281774 3915260 ~ 3936555 (-)
XLOC_006380 si:ch211-128m15.3 coding downstream 339006 3874415 ~ 3879323 (-)
XLOC_006379 prkn coding downstream 701856 3354895 ~ 3516473 (-)
XLOC_006385 ppp2r5d coding upstream 8613 4232568 ~ 4303641 (-)
XLOC_006386 znf318 coding upstream 83628 4307583 ~ 4333181 (-)
XLOC_006387 si:dkeyp-121d4.3 coding upstream 114927 4338882 ~ 4396657 (-)
XLOC_006388 NA coding upstream 181337 4405292 ~ 4407072 (-)
XLOC_006389 NA coding upstream 183902 4407857 ~ 4408486 (-)
XLOC_006338 rn7sk misc downstream 3392104 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 6040786 10264741 ~ 10264905 (-)
XLOC_006376 AL935294.1 non-coding downstream 975071 3198438 ~ 3243258 (-)
XLOC_006374 LO018354.1 non-coding downstream 1163392 3054823 ~ 3054937 (-)
XLOC_006372 NA non-coding downstream 1294205 2919298 ~ 2924124 (-)
XLOC_006371 NA non-coding downstream 1310174 2899327 ~ 2908155 (-)
XLOC_006390 CR854838.1 non-coding upstream 221598 4445553 ~ 4447653 (-)
XLOC_006393 CU856520.1 non-coding upstream 488466 4712421 ~ 4714106 (-)
XLOC_006394 NA non-coding upstream 493835 4717790 ~ 4719393 (-)

Expression


Co-expression Network