RNA id: TCONS_00012394


Basic Information

Item Value
RNA id TCONS_00012394
length 639
RNA type nonsense_mediated_decay
GC content 0.43
exon number 4
gene id XLOC_006384
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 4218329 ~ 4223955 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTTTATCTGAACTTCCCGTGAATGCTGTGCTGCTGAGAAAAGCACGCTTGTATCACAGAAGAAAGACGAGGACTCCTGCAAATTATGAACATATACTTTTGCGGAAGCATTCGGGGAGGGCGACAGGACGTGGTTATTTATCAGACAATAGTGAAGAAGTTGCAGCAGTATGGCAATGTTTTAACCGAGCATGTGAAGATAAAGATGGAGATAAAGCCATTCATGATCGGGATGTGCAGTGGCTGACGATGTCTGACGTGATAGTAGCAGAAGTGACGCAGCCATCTTTAGGTGTTGGTTATGAACTGGGCCGAGCTGTGGCAATGAACAAGAGGATCCTCTGTCTCTTCAGACCTTTTTCTGGAAAAGTGCTCTCCGCCATGATCAGAGGAGCGTCAGCCAAACCACTCTTCCAAGTACAAGACTACAAAGAGGACGAAGTGGAGAACATCTTGGAGGAATATTTTGAGACTCTCACTAAGAACTGATGAGCAGCTGATCATAACAAATCCTATGTGCTGCTCTTATTCAAATCAACAGGACTGCTTTGGTAAGCATTTGTAGTGAAAATGCATATTAAGCATACACAGTGTATTGTTACTTGCTCTTGAATAAATCTGGTTTTGTTAACAACAC

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0009159 deoxyribonucleoside monophosphate catabolic process biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-5 Predicted to enable deoxyribonucleoside 5'-monophosphate N-glycosidase activity. Predicted to be involved in deoxyribonucleoside monophosphate catabolic process and positive regulation of cell growth. Predicted to be located in nucleus. Orthologous to human DNPH1 (2'-deoxynucleoside 5'-phosphate N-hydrolase 1).

Ensembl:

ensembl_id ENSDART00000138892

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013731 lncRNA downstream 257058 3960097 ~ 3961271 (-) True XLOC_006382
TCONS_00013456 lncRNA downstream 1294205 2919298 ~ 2924124 (-) True XLOC_006372
TCONS_00013730 lncRNA downstream 1310174 2899327 ~ 2908155 (-) True XLOC_006371
TCONS_00013455 lncRNA downstream 1715153 2502083 ~ 2503176 (-) True XLOC_006366
TCONS_00013454 lncRNA downstream 1715306 2502083 ~ 2503023 (-) False XLOC_006366
TCONS_00013732 lncRNA upstream 181337 4405292 ~ 4407072 (-) True XLOC_006388
TCONS_00013733 lncRNA upstream 183902 4407857 ~ 4408486 (-) True XLOC_006389
TCONS_00012400 lncRNA upstream 221598 4445553 ~ 4447207 (-) False XLOC_006390
TCONS_00012401 lncRNA upstream 221623 4445578 ~ 4447653 (-) True XLOC_006390
TCONS_00012406 lncRNA upstream 488466 4712421 ~ 4714106 (-) True XLOC_006393
TCONS_00012392 mRNA downstream 84188 3982950 ~ 4134141 (-) True XLOC_006383
TCONS_00012391 mRNA downstream 199441 3979341 ~ 4018888 (-) False XLOC_006383
TCONS_00012390 mRNA downstream 281774 3915260 ~ 3936555 (-) True XLOC_006381
TCONS_00012388 mRNA downstream 339006 3874415 ~ 3879323 (-) False XLOC_006380
TCONS_00012389 mRNA downstream 339075 3875132 ~ 3879254 (-) True XLOC_006380
TCONS_00012395 mRNA upstream 8613 4232568 ~ 4303641 (-) True XLOC_006385
TCONS_00012396 mRNA upstream 83628 4307583 ~ 4333181 (-) False XLOC_006386
TCONS_00012398 mRNA upstream 114927 4338882 ~ 4367083 (-) False XLOC_006387
TCONS_00012399 mRNA upstream 140054 4364009 ~ 4396657 (-) True XLOC_006387
TCONS_00012403 mRNA upstream 432549 4656504 ~ 4664403 (-) False XLOC_006391
TCONS_00012381 other downstream 975071 3198438 ~ 3243258 (-) True XLOC_006376
TCONS_00012378 other downstream 1163392 3054823 ~ 3054937 (-) True XLOC_006374
TCONS_00012376 other downstream 1358918 2857461 ~ 2859411 (-) True XLOC_006370
TCONS_00012375 other downstream 1362057 2854325 ~ 2856272 (-) True XLOC_006369
TCONS_00012374 other downstream 1365251 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012397 other upstream 83730 4307685 ~ 4308666 (-) True XLOC_006386
TCONS_00012410 other upstream 752220 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012432 other upstream 2024032 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012435 other upstream 2064589 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012458 other upstream 4425756 8649711 ~ 8650051 (-) True XLOC_006434

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000005_03167707_03171889.mRNA True 433 mRNA 0.41 3 CI01000005 3167707 ~ 3172020 (+)