XLOC_006372


Basic Information

Item Value
gene id XLOC_006372
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 2919298 ~ 2924124 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013456
caccattgtttttcttgtgaaatcccaataagtttgatgtgtcacatgaccctcttcctattaaaaacaacaacagttgtatccaagatggctgacttcaaaatggccaccatggtcactaCCCATCTTGAAAATTTTGCCCCctcatatactaatgtgccacaaacaggacactAATATccccaaccattcccattttattaaggtgtatccatataaatgtaGTCAccctgtataatatatataaataaataaatactgcatcCCAATTTGCCCACTTACACTGCGTCTTATATAAAAGtgcatacttttgagtgtgtaacagaagagtttGTAGTTTAACAGTTTGCATCCATGTTTGTAGTTCTAACTGAACTCACATTCAATGCGtgatgtattgtgggcaatattagcTACTAGTGTATGCACACATATGCACTTTGAATGTCTACCGGAAATATTAGCGCATCCGTGTAACATTGGAATAGTTATTTTAACATATGACTTGGAACAGACTCTGTTTTTGACTGCTATTTGGTGACGAACggtatgtgatttgggatgcagcaATTCCTACAACCTTATATTACGTCAATACTTTTTGCAAGAGAAACATTCAAAGACAACTTTTGCTCCATCATCCCTAACCATCATCAAGTCCTTTTAGGGGGTTAGCAGTTTTAAAACAGCTCccaattattttgttttgctctTGATAGTCATTGATATATAGATCCAAAAGATCATTAAAGTATAACCACTAATCCCAGACAAAAACCTATGAAGAAATCATTATAATTCAAGAGAGACTCATCAATAGTACACCCGAAGAGACATCAGAACAAGCTTTCGGAGATGCTTTATAaatttaaagtgttaaaaaaaatgcatagtcAGTGTACAAAGATCTGAGAAACAATGGTTTACACACTCCGATTGGTGTATTGACTTGAGAAACCTGGTTCAATtatgcatttacattaatttgaGTTGAATTTTTCTTATTGGGGAAGTCTGACAATCTTTAGAGATGTGTATAATATGAAACACATCTGCGTTCAGATGCTCAATATTGAAGGATGTCAAGAAGCCGTTGCTATGAATCGATGTTTCCAGGTGAATTTATAAGTGCATGATATGAATGTTATAATCGGTGGCTTTTGCAGTGTTTAGGTGGAATGATGCCTGATTGTTTTGGTTGTGTTGGTGTGTTACATGCAACGTTGGGTCTGTGTCGAGATGAACTCCCTTCAGCTGGTCTGCAGTCGACTTTTTATACCTCTTTCCATGTACGCTTTATGGACTACTCTTGTTTTGTAACCAATTGCGAAGGACTTCGAGTCACTGAGGCGTCGATGTTGCTTTAAATGGCTTTTTTCTTATACAGTGGGCCACACTTAAGCCACACTtgaaaaaatgtatgaatgcCATTAGTAAATaactttacaatgtttattttgctagcgcacattgttattctttaggtaaatattaaatctggctgaaaaaaaaagtttgttttgtttaatcttCAATCAAAAGAAGAGTATTTGCTTCTGCGTTTGGAGTAGCAATCCTGTTGACGTCAGTTAGCctcttcagccacaatattttttatttctattgtcccattcacacggggcttcagcgttaacgtttgactgaaggcgtgtctgaagttgaggctgaagcgatcgtcatcgCAGCGTTAGccgatgaaattcagtcagcaataggccactgtctagttggtgtatttgcatacagcgatctgattggctgacgcttccgtctgcGCTTGAAAAGATGAGATAGTCGCAACTTCTGTtgcgagcaacacctctgaagcggtgccaacggatccacaatgcagttcggcaacgcctgacgtcacccattcaaagtaaatgggaagcgttgacgctgacgcctcgTGTAAATGGGGCGTAAGAGTAAATGcagtgtgcgaattatacattgacaattGGAGGGGCAATTTTTTCGGTAATGATAGTTagtacatgcttcagtgaattgAATTTATGTgttaatttaaattacatctaatttagtaataaaatgtatttgaagtTTTTGGTGATTGAGGGATGTTTAGAGTGTtctgaccagcctgatctcacgaggaaactaaACTATTTTACGTTGTCAgtctagtggctaattcatataagaAAATGTCCCATTTTAAAAAGGTCGGCGACAATAGCTTAGTGGTAAGTGCATcgactaggcatgggctggtatatgattctgacggtatgataaccttgattactgctctaaaatatattatttttaaatgtctgggtaaaatatAATGACTTtttaacagtatattttattttaagaaacattttaagtattttgtaacagtaaacatgtcaggctaaataattcaaatgcatcatagacttctgctgtctacatttgtttcagaattctttaaaatttaaaacggtatctttggagatcttttctgctggagatattgttgtcctttaaagaataataataataaataaataaaaatctttcatATACCTTAGGAAGGTTATAgtagaaaattttggcggttttaaaaccttgacttttccaaaccgcggtataccttgaaaacggttaaaTTCCATCCCTAGCATCAGCACATACCGTAGCACTGatcgagttcgattcctggctcgaggtcctttgatgacccttcccctatctctgctccccaaaCATTCCTGTCTGTAAATCTTCATTGTCCTATCACAATAAAGGTTAAAACcccttaaaaataattattaaaaaaataacgaggaggcgtggcaccaaaaacccacccctaaacccaaccttcattgggggatgagcgAATGTTACAAAATTGAACGAATGAGATactgtacgaattcatacgaattagccactaaatcaaaaagttacgaattactGTGAGATCGCGTTGGTTCTGACCTGCAGTGTCAactgattagctatttcagacGTTACTGTATTTTTTGAGAAAACATGTCTCGTGAACACTTCTGGTGTCCATCGGTGAAAAACATCTGccggtttcagactgttgaatgaacTTTTTCTTGCATAAACTGCattcacagtggtatgaaccattatagaaGTGGTCAAATTGATACGTAtgttttctgttactttatttatttaacattgttattttaaatacagATCAGATGGATTTGTTTCGTTGTAATGGGCTGACCCCCCTAATACATCTTGTAAAGCTAATTAGGAGGGCCAACTCAATGGGATTCATATAACTTTAGGTGTGACTCAAGTACCAGCTCTAGGCCCCTTAAAGTTTCGTGAATGATATCAAATGGGGAACTTTTAGAATCTTGGTGTTGGCTTTGTTATGTATATATTGATGTACCTGTATGTATAACATAATTTTGTGAGGAGGGATGTACTTTGATATGCAGAGTTTGACGTTTTTTCTTCATGCTATATAGTGTTTATGAGCTTGTTTTTACAATTGTTGACCTGTATATGCAGGTAAAGTGGCCTTGTGGCATGATTTCAGGATTTTCTTCGGACATTGCTCAGTTTGGAGACTCGGAAACTGGAGCGTTGCATACTGACATGTTTTGTTAATTGAATGTCACAGGCGTGTTTCATATTGTAAGTATTGAAAGCATTTTGATAGTAGTAACGTAAAGGGCTGAGTTGTTTGGAGAGTTTTTAATGAGTCAAGTGTGTGGTCAACGCATCGGTGTTCACCTTTAAAGATacagttgtttgtgttttttatatctgCTAAAAATCCAAAAGATAATTTCCAAAACATACACAGGGAGAGAGGGAATGGAAACGTCCAGCTGGTGATTGTATCTACATTTGGAGGAAACGTTGGGCTTGTGTCCAGCTCTGGATGTCTACATGCTTTGCAGTCTGCAGGGTATTTGATTATATTCTCATCGAATGAAGAGAAAAAGCTCAACCGAAAACCACGAAGATCATCCTGATTATGCAAATGATTCAGTGATGTTAGCGAAATATGAAAAGTTAGAAAATTTTCCATTCTTTTCTTGTGATTAAGTTTGAGCCAATCTGATTCTTTTGCATTCCTGCCAATGGGCAGAAATACTGAGGAATTTAgaaataaagaaac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1901879 regulation of protein depolymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0051261 protein depolymerization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0040011 locomotion biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013456 True 4156 lncRNA 0.37 2 2919298 2924124

Neighbor

gene id symbol gene type direction distance location
XLOC_006371 NA coding downstream 11143 2899327 ~ 2908155 (-)
XLOC_006370 BX571701.3 coding downstream 59887 2857461 ~ 2859411 (-)
XLOC_006369 BX571701.1 coding downstream 63026 2854325 ~ 2856272 (-)
XLOC_006368 BX571701.2 coding downstream 66220 2851139 ~ 2853078 (-)
XLOC_006367 cox20 coding downstream 398367 2515900 ~ 2520931 (-)
XLOC_006373 EML4 coding upstream 3513 2927637 ~ 2981472 (-)
XLOC_006374 LO018354.1 coding upstream 130699 3054823 ~ 3054937 (-)
XLOC_006375 pkdcca coding upstream 184940 3109064 ~ 3155244 (-)
XLOC_006376 AL935294.1 coding upstream 274314 3198438 ~ 3243258 (-)
XLOC_006377 ubr2 coding upstream 339729 3263853 ~ 3324773 (-)
XLOC_006338 rn7sk misc downstream 2093073 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 7340617 10264741 ~ 10264905 (-)
XLOC_006366 NA non-coding downstream 416122 2502083 ~ 2503176 (-)
XLOC_006382 NA non-coding upstream 1035973 3960097 ~ 3961271 (-)
XLOC_006388 NA non-coding upstream 1481168 4405292 ~ 4407072 (-)
XLOC_006389 NA non-coding upstream 1483733 4407857 ~ 4408486 (-)

Expression


Co-expression Network