XLOC_006375 (pkdcca)


Basic Information

Item Value
gene id XLOC_006375
gene name pkdcca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3109064 ~ 3155244 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012379
atgaagCGGAGAAAGATGGTGGTAGCGGCGGGCTTCTGCGTCTCGTTCATCTTGGGCACGCTGATGAATTTATTGTTCATTCCGGGATTCGAGCACCACAGCGAGCGGGTGCAccgccaccaccaccaccacgaGAAACATACGGACGCTCCTGCCCGGCTTCAGATCGACGACTCGCCGCCGGTAGAACCGGCCACTGTTGGGCGACTCTCTGAGCTCCAGCGGCAAATACGCGAGCGGCTGGACGAGGTTTTGCGGTACCGACAGGCGCACTGGCTCGGCACCGGACCTCTGGAACGCCGGCGACTAATGGACCTGGAGCAACGTAGCGAGTGGGAATTATACAAAGGAATTGAGAAAATTAATCATTACGATCCATCGCGATCGACTCCCGCAGTATCCATAGCAACAAAATCGCACCGGGAGATTACGCGCGAGTCGGGGCTCGGCTGCGGCAGTATCGATAACGTTACCAATGTCCAGTATTTGGGCTCTGGATACACAAAGGCGGTTTACAGGGCAGCTTTGAACAGCAGCTTCTCCGTCGCGTTAAAATCAGTCGATTTTGGAGGTCACGACATGGAGAATTGTGTGAAGAAATACGCATCGTCTGCAGACTGTTACAAACTCGCATCCTTCAAAATTATCAAGGAAATGACGCTGATGGAGAGACTGCAGCACCCCAACATTCTCAAGCTGTACGGCTCATGCTATCAGGACAGTAATGATATAAAGGAGACGGTGACGGCAATCACGGAGCTCGGCAGTCCACTGGAGATGATCCAGCTTCTGCAGACACCCTGGGAGGAAAGATTCAGAATCTGCTTGAGTCTGATGCGGCTGCTGCATTACCTGGCTCACTCTCCGCTGGGCTCCGTCACACTGCTGGACTTCAGGCCGCGGCAGTTCGTTCTGGTGGACGGAGTGTTGAAGGTGACCGACCTGGACGACGCCAGTGTGGAGGAGACGCCCTGCTCTAAGTCTGCCCCCCAAGACTGTCTGATGGAGTTCCCTGCCCGCAACTTCACCCTGCCCTGCCACAAGGGCCGCTGCCAGGGCATCAACCAAAAGAGAAACCTCTACAATGCTTACAGATTCTTCTTCACCTACTTGTTACCTCACAGCGCTCCCTCAGCCCTCAGACCTCTTCTGGATAAAATCGTCAATTCTACAGGAGAGCTGATGTGGGGCACTGACGAAACTTTGGCTCACCTCGAAAAAGTGCTGGATATCTACAGGAACGGACATTACCTCAAGAATAACACACGCATGCACAAAACAGAGTATAAACGTGTGTCGGACTCCTCGATATCAGCAGAGAACTACCGCTGCTGGCCGTCATATCAGCATGACGGATGCCTGCTGTCGGTCTACAGcgtggatgaagctgtagacgtGTGTGAGAGTCACGTTCAGTGCCGGGCCTTCGTCATGACCAATCACACCACATGGACAGGTCATCAGCTGGTGCTCTTTAAGACCGGTGCGTCCAGCATGAGCGCGGCTCCAGGTAAACTCTCATACGTGCGGCTAGGGGAAACTGagagctgagagagagagacaaaacaaTGGTCACACGTTATCCAGATCTTCTGATGCTCTACTTCTTCCTGGACGACAGCTAATCTGAATCTCAGGATTTAGGGAGGATGATCATCATTCAGGAAGCAGGACAGGGGAGGTGTTCGTGTGT
>TCONS_00012380
tgaagCGGAGAAAGATGGTGGTAGCGGCGGGCTTCTGCGTCTCGTTCATCTTGGGCACGCTGATGAATTTATTGTTCATTCCGGGATTCGAGCACCACAGCGAGCGGGTGCAccgccaccaccaccaccacgaGAAACATACGGACGCTCCTGCCCGGCTTCAGATCGACGACTCGCCGCCGGTAGAACCGGCCACTGTTGGGCGACTCTCTGAGCTCCAGCGGCAAATACGCGAGCGGCTGGACGAGGTTTTGCGGTACCGACAGGCGCACTGGCTCGGCACCGGACCTCTGGAACGCCGGCGACTAATGGACCTGGAGCAACGTAGCGAGTGGGAATTATACAAAGGAATTGAGAAAATTAATCATTACGATCCATCGCGATCGACTCCCGCAGTATCCATAGCAACAAAATCGCACCGGGAGATTACGCGCGAGTCGGGGCTCGGCTGCGGCAGTATCGATAACGTTACCAATGTCCAGTATTTGGGCTCTGGATACACAAAGGCGGTTTACAGGGCAGCTTTGAACAGCAGCTTCTCCGTCGCGTTAAAATCAGTCGATTTTGGAGGTCACGACATGGAGAATTGTGTGAAGAAATACGCATCGTCTGCAGACTGTTACAAACTCGCATCCTTCAAAATTATCAAGGAAATGACGCTGATGGAGAGACTGCAGCACCCCAACATTCTCAAGCTGTACGGCTCATGCTATCAGGACAGTAATGATATAAAGGAGACGGTGACGGCAATCACGGAGCTCGGCAGTCCACTGGAGATGATCCAGCTTCTGCAGACACCCTGGGAGGAAAGATTCAGAATCTGCTTGAGTCTGATGCGGCTGCTGCATTACCTGGCTCACTCTCCGCTGGGCTCCGTCACACTGCTGGACTTCAGGCCGCGGCAGTTCGTTCTGGTGGACGGAGTGTTGAAGGTGACCGACCTGGACGACGCCAGTGTGGAGGAGACGCCCTGCTCTAAGTCTGCCCCCCAAGACTGTCTGATGGAGTTCCCTGCCCGCAACTTCACCCTGCCCTGCCACAAGGGCCGCTGCCAGGGCATCAACCAAAAGAGAAACCTCTACAATGCTTACAGATTCTTCTTCACCTACTTGTTACCTCACAGCGCTCCCTCAGCCCTCAGACCTCTTCTGGATAAAATCGTCAATTCTACAGGTGAG

Function

symbol description
pkdcca Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; fin bud; margin; and pharyngeal arch 3-7. Orthologous to human PKDCC (protein kinase domain containing, cytoplasmic).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-30 Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; fin bud; margin; and pharyngeal arch 3-7. Orthologous to human PKDCC (protein kinase domain containing, cytoplasmic).

Ensembl:

ensembl_id ENSDARG00000035161

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012379 False 1693 mRNA 0.54 7 3109064 3155244
TCONS_00012380 True 1178 mRNA 0.55 4 3125565 3155243

Neighbor

gene id symbol gene type direction distance location
XLOC_006374 LO018354.1 coding downstream 54127 3054823 ~ 3054937 (-)
XLOC_006373 EML4 coding downstream 127592 2927637 ~ 2981472 (-)
XLOC_006372 NA coding downstream 184940 2919298 ~ 2924124 (-)
XLOC_006371 NA coding downstream 200909 2899327 ~ 2908155 (-)
XLOC_006370 BX571701.3 coding downstream 249653 2857461 ~ 2859411 (-)
XLOC_006376 AL935294.1 coding upstream 43194 3198438 ~ 3243258 (-)
XLOC_006377 ubr2 coding upstream 108609 3263853 ~ 3324773 (-)
XLOC_006378 si:ch73-193i2.2 coding upstream 172173 3327417 ~ 3351708 (-)
XLOC_006379 prkn coding upstream 199651 3354895 ~ 3516473 (-)
XLOC_006380 si:ch211-128m15.3 coding upstream 719171 3874415 ~ 3879323 (-)
XLOC_006338 rn7sk misc downstream 2282839 825904 ~ 826225 (-)
XLOC_006471 BX537274.2 misc upstream 7109497 10264741 ~ 10264905 (-)
XLOC_006369 BX571701.1 non-coding downstream 252792 2854325 ~ 2856272 (-)
XLOC_006382 NA non-coding upstream 804853 3960097 ~ 3961271 (-)
XLOC_006388 NA non-coding upstream 1250048 4405292 ~ 4407072 (-)
XLOC_006389 NA non-coding upstream 1252613 4407857 ~ 4408486 (-)
XLOC_006390 CR854838.1 non-coding upstream 1290309 4445553 ~ 4447653 (-)

Expression


Co-expression Network