RNA id: TCONS_00013731


Basic Information

Item Value
RNA id TCONS_00013731
length 1073
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_006382
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 3960097 ~ 3961271 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcaaaatctctgagaaatatttccagtgccttgttgaaccTGTGCCAtgaagtattaaggcagttctgaaggcaaaagggggtgtacctaataaagtggccgTACTGCGTGTGTGATATACCTGTGCTGACTGATTGGTGAGGCCGGTTCCCTCCAGGTCCAGAACTTCTAGGGTTCGACTGGATGCCACTGCGACAGCCAACATCCCAGCAATGTGATCCCCTGAAAACACAAACTGAAGGCTCAGAGCGCAATACGCAATCCTGCTGAATTTCACAGTGCAAACTCTGCACTTCTCCAGCAGACAAATGTGGACACTTCATACCCCGGGGAGCAACGGTCAGCAAAATAAATGTCTCTGTATATATACATCATCGACCCCATCCATTATACTTCAGAGAAAGACATGCGGTGCTTGAAAGACTTATCTGTTAAACCAAAGTGTGTTGCTGATTAAAAAGGCTTTAAAGCTGTACAGTAAGCAGAGGTGCAGTTAATGAGAAACAGAACAGAaaacagaaaattctgtcatcctttaGACATTCATGTGTTTGTAATGTCTTAACTattctagtttttaatagcagatggtgctctaggctagtttttaactgcagatgacgctctaggctgtcttttaacagcagatggcgctccaggtttgttttttaacagcagacggtgctctagcctagtttttaacagcagacggcactctctaggttagtttttaacagcagacagcgctctaggctagtttttaacagcagacggcgctctagcctagtttttaacagtagacagcgctctagtctagtttttaacagcagacggcgctctagcctagtttttaacagcagacggtgctctaggctggtgctctaggctagtttttaacagcagacggtgctctaggctggtgctctaggctagtttttaacagcagacagcgctctcgaggttagtttttaacagcagatggcgctctaggttagtttttaacaacaggtggcgctttaggctagtctTTATCTGCAGACAGCActctctaggttagtttttaacagcagatg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013456 lncRNA downstream 1035973 2919298 ~ 2924124 (-) True XLOC_006372
TCONS_00013730 lncRNA downstream 1051942 2899327 ~ 2908155 (-) True XLOC_006371
TCONS_00013455 lncRNA downstream 1456921 2502083 ~ 2503176 (-) True XLOC_006366
TCONS_00013454 lncRNA downstream 1457074 2502083 ~ 2503023 (-) False XLOC_006366
TCONS_00012370 lncRNA downstream 1609742 2349076 ~ 2350355 (-) True XLOC_006364
TCONS_00013732 lncRNA upstream 444021 4405292 ~ 4407072 (-) True XLOC_006388
TCONS_00013733 lncRNA upstream 446586 4407857 ~ 4408486 (-) True XLOC_006389
TCONS_00012400 lncRNA upstream 484282 4445553 ~ 4447207 (-) False XLOC_006390
TCONS_00012401 lncRNA upstream 484307 4445578 ~ 4447653 (-) True XLOC_006390
TCONS_00012406 lncRNA upstream 751150 4712421 ~ 4714106 (-) True XLOC_006393
TCONS_00012390 mRNA downstream 23542 3915260 ~ 3936555 (-) True XLOC_006381
TCONS_00012388 mRNA downstream 80774 3874415 ~ 3879323 (-) False XLOC_006380
TCONS_00012389 mRNA downstream 80843 3875132 ~ 3879254 (-) True XLOC_006380
TCONS_00012387 mRNA downstream 443624 3474202 ~ 3516473 (-) True XLOC_006379
TCONS_00012386 mRNA downstream 485724 3354895 ~ 3474373 (-) False XLOC_006379
TCONS_00012391 mRNA upstream 18070 3979341 ~ 4018888 (-) False XLOC_006383
TCONS_00012392 mRNA upstream 21679 3982950 ~ 4134141 (-) True XLOC_006383
TCONS_00012393 mRNA upstream 257058 4218329 ~ 4223955 (-) True XLOC_006384
TCONS_00012395 mRNA upstream 271297 4232568 ~ 4303641 (-) True XLOC_006385
TCONS_00012396 mRNA upstream 346312 4307583 ~ 4333181 (-) False XLOC_006386
TCONS_00012381 other downstream 716839 3198438 ~ 3243258 (-) True XLOC_006376
TCONS_00012378 other downstream 905160 3054823 ~ 3054937 (-) True XLOC_006374
TCONS_00012376 other downstream 1100686 2857461 ~ 2859411 (-) True XLOC_006370
TCONS_00012375 other downstream 1103825 2854325 ~ 2856272 (-) True XLOC_006369
TCONS_00012374 other downstream 1107019 2851139 ~ 2853078 (-) True XLOC_006368
TCONS_00012394 other upstream 257058 4218329 ~ 4223955 (-) False XLOC_006384
TCONS_00012397 other upstream 346414 4307685 ~ 4308666 (-) True XLOC_006386
TCONS_00012410 other upstream 1014904 4976175 ~ 4992385 (-) False XLOC_006396
TCONS_00012432 other upstream 2286716 6247987 ~ 6252514 (-) True XLOC_006414
TCONS_00012435 other upstream 2327273 6288544 ~ 6320158 (-) False XLOC_006416

Expression Profile

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